3mq6_GH : 3D-footprint complex

structure name	DOMAIN SWAPPED SGRAI WITH DNA AND CALCIUM BOUND
reference	Dunten et al. 'Plos 8 e1000554 2010
source	Streptomyces griseus
experiment	X-ray (resolution=2.00, R-factor=?)
structural superfamily	Restriction endonuclease-like;
reference complex	6obj_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3mq6_G interface=30,35,91,94,95,151,243,245,246,247,248, pftysieatrnlatterciqdirnapvrnRstqfQlaqqnmlaytfgevipgfasagingmdyrdvigrpvenavtegthffrddfrvdsNakAKvagdifeivssavmwncaarwnslmvgegwrsqprysrptlspsprrqvavlnlpRsfdwvsllvpesqevieefraglrkdglglptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavafkrSlRSDRlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglaegvhrairelyvpptaadlarrffaflnermelvng > 3mq6_H interface=28,30,35,91,95,151,243,245,246,247,248, pftysieatrnlatterciqdirnapvRnRstqfQlaqqnmlaytfgevipgfasagingmdyrdvigrpvenavtegthffrddfrvdsNakaKvagdifeivssavmwncaarwnslmvgegwrsqprysrptlspsprrqvavlnlpRsfdwvsllvpesqevieefraglrkdglglptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavafkrSlRSDRlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglaegavhrairelyvpptaadlarrffaflnermelvng
interface signature	RQNAKRSRSDR/RRQNKRSRSDR

Estimated binding specificities ?

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# IC=9.110 IC/col=0.828 n_of_columns=11

specificity:

A |   5  20  18   1  60   0   0   0   0  12   0
C |   5  23  27  95  12  95  96   0   1  12   0
G |  79  23  18   0  12   1   0  95  95  12  95
T |   7  30  33   0  12   0   0   1   0  60   1

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updated Fri Dec 15 16:09:50 2023