3n4m_ABC : 3D-footprint complex

structure name	E. COLI RNA POLYMERASE ALPHA SUBUNIT C-TERMINAL DOMAIN IN COMPLEX WITH CAP AND DNA
reference	Lara-Gonzalez et al.
source	ESCHERICHIA COLI
experiment	X-ray (resolution=2.99, R-factor=?)
structural superfamily	C-terminal domain of RNA polymerase alpha subunit;
reference complex	3n4m_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3n4m_A interface=164,173,174,175,179, tdptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrQeigqivgcSREtvgRilkmledqnlisahgktivvygtr > 3n4m_B interface=17, fdpillrpvddleltvRsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenwp > 3n4m_C interface=16, dpillrpvddleltvRsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenwp
interface signature	QSRER/R/R

Estimated binding specificities ?

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# IC=8.475 IC/col=0.499 n_of_columns=17

specificity:

A |   0   0  80   0  80  24  24  24  16  66  24  24  24  24  24  80  96
C |   0  96   5  96   5  24  24  24   5  15  24  24  24  24  24   0   0
G |   0   0   5   0   6  24  24  24  10  10  24  24  24  24  24   5   0
T |  96   0   6   0   5  24  24  24  65   5  24  24  24  24  24  11   0

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updated Tue Jul 29 22:12:32 2025