3n4m_ABC : 3D-footprint complex

structure name	E. COLI RNA POLYMERASE ALPHA SUBUNIT C-TERMINAL DOMAIN IN COMPLEX WITH CAP AND DNA
reference	Lara-Gonzalez et al.
source	ESCHERICHIA COLI
experiment	X-ray (resolution=2.99, R-factor=?)
structural superfamily	Insert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex	3iyd_A 6psq_M 7c97_K 8y6u_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3n4m_A interface=164,173,174,175,179, tdptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrQeigqivgcSREtvgRilkmledqnlisahgktivvygtr > 3n4m_B interface=17, fdpillrpvddleltvRsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenwp > 3n4m_C interface=16, dpillrpvddleltvRsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenwp
interface signature	QSRER/R/R

Estimated binding specificities ?

readout + contact

# IC=6.463 IC/col=0.380 n_of_columns=17

specificity:

A |   0  19  24  24  24  24  24  24  24  24  24  24   9   0   9   0  96
C |   0   0  24  24  24  24  24  24  24  24  24  24  11   0  21   0   0
G |   0  10  24  24  24  24  24  24  24  24  24  24  19  96   9  96   0
T |  96  67  24  24  24  24  24  24  24  24  24  24  57   0  57   0   0

scan!

home
updated Wed Jun 24 17:35:07 2026