3nic_BD : 3D-footprint complex

structure name	DNA BINDING AND CLEAVAGE BY THE GIY-YIG ENDONUCLEASE R.ECO29KI INACTIVE VARIANT Y49F
reference	Stoddard et al.
source	ESCHERICHIA COLI
experiment	X-ray (resolution=2.80, R-factor=?)
reference complex	3mx4_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3nic_B interface=161,162,163,168, hnkkfdrsehvyrndsflelikdavrffsgtpvhslppperfqgagvfalyytghyslydeysrinrkaynlpiyvgkavpagwrqsrisdhetragselsnrirehgrniaktsnldlcdfscrfvifeatgsdmistveaalikiykplwntvvdgfgNHTpgagRfaqaksdwdvihpgrewaekctgvhsepyfieerikqyfsks > 3nic_D interface=85,103,161,162,163,168, hnkkfdrsehvyrndsflelikdavrffsgtpvhslppperfqgagvfalyytghyslydeysrinrkaynlpiyvgkavpagwRqsrisdhetragselsnRirehgrniaktsnldlcdfscrfvifeatgsdmistveaalikiykplwntvvdgfgNHTpgagRfaqaksdwdvihpgrewaekctgvhsepyfieerikqyfsk
interface signature	NHTR/RRNHTR

Estimated binding specificities ?

readout + contact

# IC=10.347 IC/col=0.647 n_of_columns=16

specificity:

A |   8   0   0   0   0   0   0   7  24  24  24  24  24  24  14   0
C |  81  96  96   0  96   0   0   7  24  24  24  24  24  24  24   7
G |   0   0   0  96   0  96  96  75  24  24  24  24  24  24  51  75
T |   7   0   0   0   0   0   0   7  24  24  24  24  24  24   7  14

scan!

home
updated Wed Jun 24 17:37:51 2026