3nic_BD : 3D-footprint complex

structure name	DNA BINDING AND CLEAVAGE BY THE GIY-YIG ENDONUCLEASE R.ECO29KI INACTIVE VARIANT Y49F
reference	Stoddard et al.
source	ESCHERICHIA COLI
experiment	X-ray (resolution=2.80, R-factor=?)
reference complex	3mx4_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3nic_B interface=161,162,163,168, hnkkfdrsehvyrndsflelikdavrffsgtpvhslppperfqgagvfalyytghyslydeysrinrkaynlpiyvgkavpagwrqsrisdhetragselsnrirehgrniaktsnldlcdfscrfvifeatgsdmistveaalikiykplwntvvdgfgNHTpgagRfaqaksdwdvihpgrewaekctgvhsepyfieerikqyfsks > 3nic_D interface=85,103,161,162,163,168, hnkkfdrsehvyrndsflelikdavrffsgtpvhslppperfqgagvfalyytghyslydeysrinrkaynlpiyvgkavpagwRqsrisdhetragselsnRirehgrniaktsnldlcdfscrfvifeatgsdmistveaalikiykplwntvvdgfgNHTpgagRfaqaksdwdvihpgrewaekctgvhsepyfieerikqyfsk
interface signature	NHTR/RRNHTR

Estimated binding specificities ?

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# IC=10.298 IC/col=0.644 n_of_columns=16

specificity:

A |   7   9  24  24  24  24  24  24  14   0   0   0   0   0   0   0
C |  75  66  24  24  24  24  24  24  66  96  96   0  96   0   0   7
G |   7  14  24  24  24  24  24  24   9   0   0  96   0  96  96  82
T |   7   7  24  24  24  24  24  24   7   0   0   0   0   0   0   7

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updated Mon Jan 5 05:50:04 2026