interface graph thumbnail
legend  pdf

structure nameIRON-CATALYZED OXIDATION INTERMEDIATES CAPTURED IN A DNA REPAIR DIOXYGENASE
(Alpha-ketoglutarate-dependent dioxygenase AlkB)
referenceYang et al. Nature 468 330 2010
sourceEscherichia coli
experimentX-ray (resolution=1.75, R-factor=0.167)
structural superfamilyClavaminate synthase-like;
sequence family2OGFeII oxygenase superfamily;
reference complex4nih_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureCR

Estimated binding specificities ?

contactlogo
# IC=3.101 IC/col=0.775 n_of_columns=4 specificity:   
A |   0   0  16  54
C |   0   0  13  13
G |  96  96  13  16
T |   0   0  54  13
scan!

home
updated Thu Sep 12 17:47:47 2024