interface graph thumbnail
legend  pdf

structure nameIRON-CATALYZED OXIDATION INTERMEDIATES CAPTURED IN A DNA REPAIR DIOXYGENASE
(Alpha-ketoglutarate-dependent dioxygenase AlkB)
referenceYang et al. Nature 468 330 2010
sourceEscherichia coli
experimentX-ray (resolution=1.77, R-factor=0.165)
structural superfamilyClavaminate synthase-like;
sequence family2OGFeII oxygenase superfamily;
reference complex4nih_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureCR

Estimated binding specificities ?

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# IC=3.101 IC/col=0.775 n_of_columns=4 specificity:   
A |  54  13   0   0
C |  16  54   0   0
G |  13  16  96   0
T |  13  13   0  96
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updated Thu Sep 12 17:47:57 2024