interface graph thumbnail
legend  pdf

structure nameIRON-CATALYZED OXIDATION INTERMEDIATES CAPTURED IN A DNA REPAIR DIOXYGENASE
(Alpha-ketoglutarate-dependent dioxygenase AlkB)
referenceYang et al. Nature 468 330 2010
sourceEscherichia coli
experimentX-ray (resolution=1.58, R-factor=0.200)
structural superfamilyClavaminate synthase-like;
sequence family2OGFeII oxygenase superfamily;
reference complex4nih_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureCR

Estimated binding specificities ?

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# IC=3.142 IC/col=0.786 n_of_columns=4 specificity:   
A |   0   0  13  54
C |   0   0  13  13
G |  96  96  13  16
T |   0   0  57  13
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updated Thu Sep 12 17:48:00 2024