3oda_EF : 3D-footprint complex

structure name	HUMAN PARP-1 ZINC FINGER 1 (ZN1) BOUND TO DNA
reference	Langelier et al. J.Biol.Chem. 286 10690 2011
source	Homo sapiens
experiment	X-ray (resolution=2.64, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3oda_E interface=13,38,39,43, dklyrveyaksgRasckkcsesipkdslrmaimvqspMFdgkVphwyhfscfwkvghsirhpdvevdgfselrwddqqkvkktaea > 3oda_F interface=14,40,44,45, sdklyrveyaksgRasckkcsesipkdslrmaimvqspmFdgkVPhwyhfscfwkvghsirhpdvevdgfselrwddqqkvkktaeaggv
interface signature	RMFV/RFVP

Estimated binding specificities ?

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# IC=3.101 IC/col=0.310 n_of_columns=10

specificity:

A |   0  24  13  24  24  24  24  16  24   0
C |   0  24  54  24  24  24  24  13  24  96
G |  96  24  16  24  24  24  24  54  24   0
T |   0  24  13  24  24  24  24  13  24   0

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updated Fri Dec 13 16:47:14 2024