3oqg_AB : 3D-footprint complex

structure name	RESTRICTION ENDONUCLEASE HPY188I IN COMPLEX WITH SUBSTRATE DNA
reference	Sokolowska et al. 'Nucleic 39 1554 2011
source	HELICOBACTER PYLORI
experiment	X-ray (resolution=1.75, R-factor=?)
reference complex	3oqg_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3oqg_A interface=90,92,93,96,101,106,107,108,109,110,111,175, hhhhefmakrksdiilksvddlkdeidykdfeykeyfnllcelvpnnslekleinaideknmkneglvyvfviqgkifkighsitpitkRvQSynCgkveYrkngTCSTTNyfvlqsllkinkivqvyaffpeqptytlfgktyqdsfstskraenvilenfiknhnkkpigctQt > 3oqg_B interface=88,89,91,92,95,100,105,106,107,108,109,110,174, hhhefmakrksdiilksvddlkdeidykdfeykeyfnllcelvpnnslekleinaideknmkneglvyvfviqgkifkighsitpitKRvQSynCgkveYrkngTCSTTNyfvlqsllkinkivqvyaffpeqptytlfgktyqdsfstskraenvilenfiknhnkkpigctQt
interface signature	RQSCYTCSTTNQ/KRQSCYTCSTTNQ

Estimated binding specificities ?

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# IC=9.879 IC/col=1.098 n_of_columns=9

specificity:

A |  12   0   0   0  96   0  96   0  13
C |  12   0   0  96   0   0   0   0  56
G |  60   0   0   0   0  96   0   0  14
T |  12  96  96   0   0   0   0  96  13

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updated Mon Sep 9 19:23:06 2024