3oqn_AC : 3D-footprint complex

structure name	STRUCTURE OF CCPA-HPR-SER46-P-GNTR-DOWN CRE
reference	Schumacher et al. 'Nucleic 39 2931 2011
source	BACILLUS SUBTILIS
experiment	X-ray (resolution=3.30, R-factor=?)
structural superfamily	Periplasmic binding protein-like I;lambda repressor-like DNA-binding domains;
reference complex	3oqm_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3oqn_A interface=15,16,17,20,21,28,52,55,56, mnitiydvareanvSMAtvSRvvngnpNvkpttrkkvleaierlgyrpnavArgLAskktttvgviipdissifyselargiediatmykyniilsnsdqnmekelhllntmlgkqvdgivfmggnitdehvaefkrspvpivlaasveeqeetpsvaidyeqaiydavkllvdkghtdiafvsgpmaepinrskklqgykraleeanlpfneqfvaegdytydsglealqhlmsldkkptailsatdemalgiihaaqdqglsipedldiigfdntrlslmvrpqlstvvqptydigavamrlltklmnkepveehivelphrielrkstk > 3oqn_C interface=5,6,15,16,17,18,20,21,28,52,55,56, mnitIYdvareanvSMATvSRvvngnpNvkpttrkkvleaierlgyrpnavArgLAskktttvgviipdissifyselargiediatmykyniilsnsdqnmekelhllntmlgkqvdgivfmggnitdehvaefkrspvpivlaasveeqeetpsvaidyeqaiydavkllvdkghtdiafvsgpmaepinrskklqgykraleeanlpfneqfvaegdytydsglealqhlmsldkkptailsatdemalgiihaaqdqglsipedldiigfdntrlslmvrpqlstvvqptydigavamrlltklmnkepveehivelphrielrkstk
interface signature	SMASRNALA/IYSMATSRNALA

Estimated binding specificities ?

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# IC=12.572 IC/col=0.898 n_of_columns=14

specificity:

A |   0   0   0  24  60  24   0   0   0   6  12  90   0  96
C |   0   0   0  24   6  24  96   0  96  18   6   0  96   0
G |   0  96   6  24  12  24   0  96   0  18  12   0   0   0
T |  96   0  90  24  18  24   0   0   0  54  66   6   0   0

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updated Mon Sep 9 19:23:37 2024