3oqo_AC : 3D-footprint complex

structure name	CCPA-HPR-SER46P-SYN CRE
reference	schumacher et al. 'Nucleic 39 2931 2011
source	BACILLUS SUBTILIS
experiment	X-ray (resolution=2.97, R-factor=?)
structural superfamily	Periplasmic binding protein-like I;lambda repressor-like DNA-binding domains;
reference complex	3oqm_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3oqo_A interface=5,15,16,17,20,21,28,52,55,56, mnitIydvareanvSMAtvSRvvngnpNvkpttrkkvleaierlgyrpnavArgLAskktttvgviipdissifyselargiediatmykyniilsnsdqnmekelhllntmlgkqvdgivfmggnitdehvaefkrspvpivlaasveeqeetpsvaidyeqaiydavkllvdkghtdiafvsgpmaepinrskklqgykraleeanlpfneqfvaegdytydsglealqhlmsldkkptailsatdemalgiihaaqdqglsipedldiigfdntrlslmvrpqlstvvqptydigavamrlltklmnkepveehivelphrielrkstka > 3oqo_C interface=5,15,16,17,20,21,28,52,55,56, mnitIydvareanvSMAtvSRvvngnpNvkpttrkkvleaierlgyrpnavArgLAskktttvgviipdissifyselargiediatmykyniilsnsdqnmekelhllntmlgkqvdgivfmggnitdehvaefkrspvpivlaasveeqeetpsvaidyeqaiydavkllvdkghtdiafvsgpmaepinrskklqgykraleeanlpfneqfvaegdytydsglealqhlmsldkkptailsatdemalgiihaaqdqglsipedldiigfdntrlslmvrpqlstvvqptydigavamrlltklmnkepveehivelphrielrkstk
interface signature	ISMASRNALA/ISMASRNALA

Estimated binding specificities ?

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# IC=11.374 IC/col=0.758 n_of_columns=15

specificity:

A |   5   0   0  24  45  60  94   0   0  13  24  24  74   0  96
C |   7   0   0  24  38   8   0  96   0  52  24  24   4  96   0
G |   8   0  96  24   5  23   2   0  96  10  24  24  13   0   0
T |  76  96   0  24   8   5   0   0   0  21  24  24   5   0   0

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updated Mon Sep 9 19:23:55 2024