3q0a_B : 3D-footprint complex

structure name	X-RAY CRYSTAL STRUCTURE OF THE TRANSCRIPTION INITIATION COMPLEX OF THE N4 MINI-VRNAP WITH P2 PROMOTER: MISMATCH COMPLEX (Virion RNA polymerase)
reference	Proc.Natl.Acad.Sci.USA 108 3566 2011
source	Enterobacteria phage N4
experiment	X-ray (resolution=2.69, R-factor=0.220)
reference complex	3q23_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3q0a_B interface=110,112,115,125,167,169,170,173,176,177,198,200,201,204,263,264,265,314,671,674,676,813,817,897,900,913,917,921, teelkegidavypslvgtadskaegiknyfklsftlpeeqksrtvgseaplkdvaqalssraryelfteketanpafngevikrykelmehgegiadilrsrlakflntKdVgkRfaqgteanrWvggkllniveqdgdtfkyneqllqtavlaglqwrltatsntAiKDakDvaAItgidqallpeglveqfdtgmTlTEavSslaqkiesywglsrnpnaplgytkgiptamaaeilaafvestdvvenivdmseidpdnKKTiglytiteldsfdpinsfptaieeavlvnptekmffgddippvantqlRnpavrntpeqkaalkaeqatefyvhtpmvqfyetlgkdrilelmgagtlnkellndnhakslegknrsvedsynqlfsvieqvraqsedistvpihyaynmtrvgrmqmlgkynpqsaklvreailptkatldlsnqnnedfsafqlglaqaldikvhtmtrevmsdeltkllegnlkpaidmmvefnttgslpenavdvlntalgdrksfvalmalmeysrylvaedksafvtplyveadgvtngpinammlmtgglftpdwirniakgglfigspnktmnehrstadnndlyqastnalmeslgklrsnyasnmpiqsqidsllslmdlflpdinlgengalelkrgiaknpltItiYgSgargiagklvssvtdaiyermsdvlkarakdpnisaamamfgkqaaseahaeellarflkdmetltstvpvkrkgvlelqstgtgakgkinpktytikgeqlkalqenmlhffveplrngitqtvgeslvysteqlQkatQiqsvvledmfkqrvqeklaekakdptwkkgdfltqkelndiqaslnnlapmietgsqtfyiagsenaevanqvlatnldDrmRvpmsiyapaqagVagiPfmtIgtgdgmmmqtlstmkgapkntlkifdgmniglnditdasrkaneavytswqgnpiknvyesyakfmknvdfsklspealeaigksaleydqrenatvddianaasliernlrnialgvdirhkvldkvnlsidqmaavgapyqnngkidlsnmtpeqqadelnklfreelear
interface signature	KVRWAKDDAITTESKKTRIYSQQDRVPI

Estimated binding specificities ?

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# IC=18.285 IC/col=0.914 n_of_columns=20

specificity:

A |   0   0   7  73  96  96  96   0  73  96   0   0   0   0  24   7  24  24  24   0
C |   0   0  73   7   0   0   0   0   9   0   0  96   0   0  24   7  24  24  24  96
G |  96   0   9   7   0   0   0  96   7   0  96   0  96  96  24  75  24  24  24   0
T |   0  96   7   9   0   0   0   0   7   0   0   0   0   0  24   7  24  24  24   0

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updated Thu Sep 12 17:55:50 2024