3q22_B : 3D-footprint complex

structure name	X-RAY CRYSTAL STRUCTURE OF THE N4 MINI-VRNAP AND P2_7A PROMOTER TRANSCRIPTION INITIATION COMPLEX WITH GTP AND MAGNESIUM: SUBSTRATE COMPLEX I (Virion RNA polymerase)
reference	Gleghorn et al. Proc.Natl.Acad.Sci.USA 108 3566 2011
source	Enterobacteria phage N4
experiment	X-ray (resolution=2.11, R-factor=0.209)
reference complex	3q23_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3q22_B interface=110,112,115,125,167,169,170,173,177,198,200,201,263,264,265,314,667,671,674,676,813,897,900,913,921, teelkegidavypslvgtadskaegiknyfklsftlpeeqksrtvgseaplkdvaqalssraryelfteketanpafngevikrykelmehgegiadilrsrlakflntKdVgkRfaqgteanrWvggkllniveqdgdtfkyneqllqtavlaglqwrltatsntAiKDakDvaaItgidqallpeglveqfdtgmTlTEavsslaqkiesywglsrnpnaplgytkgiptamaaeilaafvestdvvenivdmseidpdnKKTiglytiteldsfdpinsfptaieeavlvnptekmffgddippvantqlRnpavrntpeqkaalkaeqatefyvhtpmvqfyetlgkdrilelmgagtlnkellndnhakslegknrsvedsynqlfsvieqvraqsedistvpihyaynmtrvgrmqmlgkynpqsaklvreailptkatldlsnqnnedfsafqlglaqaldikvhtmtrevmsdeltkllegnlkpaidmmvefnttgslpenavdvlntalgdrksfvalmalmeysrylvaedksafvtplyveadgvtngpinammlmtgglftpdwirniakgglfigspnktmnehrstadnndlyqastnalmeslgklrsnyasnmpiqsqidsllslmdlflpdinlgengalelkrgiakNpltItiYgSgargiagklvssvtdaiyermsdvlkarakdpnisaamamfgkqaaseahaeellarflkdmetltstvpvkrkgvlelqstgtgakgkinpktytikgeqlkalqenmlhffveplrngitqtvgeslvysteqlQkatqiqsvvledmfkqrvqeklaekakdptwkkgdfltqkelndiqaslnnlapmietgsqtfyiagsenaevanqvlatnldDrmRvpmsiyapaqagVagipfmtIgtgdgmmmqtlstmkgapkntlkifdgmniglnditdasrkaneavytswqgnpiknvyesyakfmknvdfsklspealeaigksaleydqrenatvddianaasliernlrnialgvdirhkvldkvnlsidqmaavgapyqnngkidlsnmtpeqqadelnklfreelear
interface signature	KVRWAKDDITTEKKTRNIYSQDRVI

Estimated binding specificities ?

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# IC=16.426 IC/col=0.821 n_of_columns=20

specificity:

A |   0   0  24  24  96  96  96   0  54  96   0   0   0   0  24  16  24  24  24   0
C |   0  96  24  24   0   0   0   0  13   0   0  96   0   0  24  13  24  24  24  96
G |   0   0  24  24   0   0   0  96  13   0  96   0  96  96  24  54  24  24  24   0
T |  96   0  24  24   0   0   0   0  16   0   0   0   0   0  24  13  24  24  24   0

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updated Thu Sep 12 17:56:18 2024