3qoq_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE TRANSCRIPTION FACTOR AMRZ IN COMPLEX WITH THE 18 BASE PAIR AMRZ1 BINDING SITE
reference	Pryor Jr. et al. 'Plos 8 e1002648 2012
source	Pseudomonas aeruginosa
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	Ribbon-helix-helix;
reference complex	3qoq_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3qoq_A interface=4,9,11, tysSrtadKfVvrlpegmreqiaevarshhrsmnseiiarleqsllqega > 3qoq_B interface=5,7, adkfVvRlpegmreqiaevarshhrsmnseiiarleqsllqega > 3qoq_C interface=4,9,11, tysSrtadKfVvrlpegmreqiaevarshhrsmnseiiarleqsllqeg > 3qoq_D interface=5,7, adkfVvRlpegmreqiaevarshhrsmnseiiarleqsllqegalqdn
interface signature	SKV/VR/SKV/VR

Estimated binding specificities ?

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# IC=11.873 IC/col=0.913 n_of_columns=13

specificity:

A |   0  20   0   0   0  96  24  24  49   1   0   0   0
C |   0  19   0   0  96   0  24  24  19  86   0  96  96
G |   0  19  96  96   0   0  24  24   9   0  96   0   0
T |  96  38   0   0   0   0  24  24  19   9   0   0   0

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updated Mon Jan 5 06:03:13 2026