3qoq_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE TRANSCRIPTION FACTOR AMRZ IN COMPLEX WITH THE 18 BASE PAIR AMRZ1 BINDING SITE
reference	Pryor Jr. et al. 'Plos 8 e1002648 2012
source	Pseudomonas aeruginosa
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	Ribbon-helix-helix;
reference complex	3qoq_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3qoq_A interface=4,9,11, tysSrtadKfVvrlpegmreqiaevarshhrsmnseiiarleqsllqega > 3qoq_B interface=5,7, adkfVvRlpegmreqiaevarshhrsmnseiiarleqsllqega > 3qoq_C interface=4,9,11, tysSrtadKfVvrlpegmreqiaevarshhrsmnseiiarleqsllqeg > 3qoq_D interface=5,7, adkfVvRlpegmreqiaevarshhrsmnseiiarleqsllqegalqdn
interface signature	SKV/VR/SKV/VR

Estimated binding specificities ?

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# IC=10.669 IC/col=0.821 n_of_columns=13

specificity:

A |   0   0   0   9  24  24  24   9   0   0   0  67  96
C |   0   0  96  11  24  24  24   9   0  96  96  11   0
G |  96  96   0  67  24  24  24   9  96   0   0   9   0
T |   0   0   0   9  24  24  24  69   0   0   0   9   0

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updated Mon Sep 9 19:28:52 2024