3qym_ACDEFH : 3D-footprint complex

structure name	STRUCTURE OF P63 DNA BINDING DOMAIN IN COMPLEX WITH A 10 BASE PAIR A/T RICH RESPONSE ELEMENT HALF SITE
reference	Herzberg et al. Proc.Natl.Acad.Sci.USA 108 6456 2011
source	Homo sapiens
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	p53-like transcription factors;
reference complex	3qyn_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3qym_A interface=179,180,183, spsntdypgphsfdvsfqtaksatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsi > 3qym_C interface=182,183,186, spsntdypgphsfdvsfqqsstaksatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsi > 3qym_D interface=183,184,187, aspsntdypgphsfdvsfqqsstaksatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsi > 3qym_E interface=183,184,187, aspsntdypgphsfdvsfqqsstaksatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsir > 3qym_F interface=182,183,186, spsntdypgphsfdvsfqqsstaksatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsi > 3qym_H interface=176,177,180, psntdypgphsfdvsfqqsatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsi
interface signature	ACR/ACR/ACR/ACR/ACR/ACR

Estimated binding specificities ?

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# IC=18.600 IC/col=0.620 n_of_columns=30

specificity:

A |   0   0  24  24  24  24  24  55   0  96   0   0  24  24   4  88  24  57   0  94   0   0  24  24  24  24  24  55   0  96
C |   0   0  24  24  24  24  24   9  96   0   1   0  24  24   1   4  24  11  96   0   0   0  24  24  24  24  24  17  96   0
G |   0  96  24  24  24  24  24  17   0   0   1  96  24  24   1   3  24  15   0   1   0  96  24  24  24  24  24  15   0   0
T |  96   0  24  24  24  24  24  15   0   0  94   0  24  24  90   1  24  13   0   1  96   0  24  24  24  24  24   9   0   0

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updated Mon Sep 9 19:29:22 2024