3qym_ACDEFH : 3D-footprint complex

structure name	STRUCTURE OF P63 DNA BINDING DOMAIN IN COMPLEX WITH A 10 BASE PAIR A/T RICH RESPONSE ELEMENT HALF SITE
reference	Herzberg et al. Proc.Natl.Acad.Sci.USA 108 6456 2011
source	Homo sapiens
experiment	X-ray (resolution=3.20, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3qym_A interface=179,180,183, spsntdypgphsfdvsfqtaksatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsi > 3qym_C interface=182,183,186, spsntdypgphsfdvsfqqsstaksatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsi > 3qym_D interface=183,184,187, aspsntdypgphsfdvsfqqsstaksatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsi > 3qym_E interface=183,184,187, aspsntdypgphsfdvsfqqsstaksatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsir > 3qym_F interface=182,183,186, spsntdypgphsfdvsfqqsstaksatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsi > 3qym_H interface=176,177,180, psntdypgphsfdvsfqqsatwtystelkklycqiaktcpiqikvmtpppqgavirampvykkaehvtevvkrcpnhelsrefnegqiappshlirvegnshaqyvedpitgrqsvlvpyeppqvgtefttvlynfmcnsscvggmnrrpiliivtletrdgqvlgrrcfearicACpgRdrkadedsi
interface signature	ACR/ACR/ACR/ACR/ACR/ACR

Estimated binding specificities ?

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# IC=18.163 IC/col=0.605 n_of_columns=30

specificity:

A |   0   0  24  24  24  24  24  57   0  96   0   0  24  24   0  69  24  63   0  95   1   0  24  24  24  24  24  63   0  96
C |   1   0  24  24  24  24  24  15  96   0   0   0  24  24  10   9  24   7  96   0   3   0  24  24  24  24  24   9  96   0
G |   1  96  24  24  24  24  24  11   0   0   0  96  24  24   0  11  24  17   0   0   0  96  24  24  24  24  24  15   0   0
T |  94   0  24  24  24  24  24  13   0   0  96   0  24  24  86   7  24   9   0   1  92   0  24  24  24  24  24   9   0   0

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updated Fri Dec 13 16:55:02 2024