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legend  pdf

structure nameNKX2.5 HOMEODOMAIN DIMER BOUND TO ANF-242 DNA
referenceKasahara et al. Biochemistry 51 6312 2012
sourceHomo sapiens
experimentX-ray (resolution=1.70, R-factor=?)
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRIQNYK/RIQNY

Estimated binding specificities ?

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# IC=14.614 IC/col=0.769 n_of_columns=19 specificity:   
A |   2   2  90  96   0  10   0  24  24  24  24  24   0   0   1   0  10  12  83
C |   2   4   2   0   0   5   0  24  24  24  24  24  93   0  93   0   7   4   1
G |   0  88   2   0  96   9  96  24  24  24  24  24   1   0   0   0  15  70  12
T |  92   2   2   0   0  72   0  24  24  24  24  24   2  96   2  96  64  10   0
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updated Fri Dec 13 17:14:51 2024