3rtv_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH NATURAL PRIMER/TEMPLATE DNA (DNA polymerase I, thermostable)
reference	Diederichs et al. Nat.Chem.Biol. 8 612 2012
source	Thermus aquaticus
experiment	X-ray (resolution=1.90, R-factor=0.164)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
sequence family	DNA polymerase family A; Taq polymerase, exonuclease;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3rtv_A interface=248,252,281,288,291,462,492, aleeapwpppegafvgfvlsrkepmwadllalaaarggrvhrapepykalrdlkeargllakdlsvlalreglglppgddpmllaylldpsnttpegvarryggewteeageraalserlfanlwgrlegeerllwlyreverplsavlahmeatgvrldvaylralslevaeeiarleaevfrlaghpfnlnsrdqlervlfdelglpaigktektgkrstsaavlealreahpivekilqyreltKlksTyidplpdlihprtgrlhtrfnqtatatgRlsssdpNlqNipvrtplgqrirrafiaeegwllvaldysqielrvlahlsgdenlirvfqegrdihtetaswmfgvpreavdplmrraaktinfgvlygmsahrlsqelaipyeeaqafieryfqsfpkvrawiektleegrrrgyvetlfgrrryvpdlearvksvreaaermafnmpvQgtaadlmklamvklfprleemgarmllqvHdelvleapkeraeavarlakevmegvyplavplevevgigedwlsake
interface signature	KTRNNQH

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# IC=2.635 IC/col=0.659 n_of_columns=4

A |   9   0  11   9
C |   9  96   9  67
G |  67   0  67   9
T |  11   0   9  11

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updated Mon Dec 16 22:00:44 2024