3s8q_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE R-M CONTROLLER PROTEIN C.ESP1396I OL OPERATOR COMPLEX
reference	McGeehan et al. 'Nucleic 40 4158 2012
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.10, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3s8q_A interface=24,33,34,35,36,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgiernsRnltikslelimkglevsdvvffemlikeilk > 3s8q_B interface=32,33,34,35,37,41,44, sfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkhd
interface signature	EDRTYSR/DRTYSRR

Estimated binding specificities ?

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# IC=15.050 IC/col=0.941 n_of_columns=16

specificity:

A |   0   0   6  90   0   5  24   8  67  24   0   0   0  79   0  96
C |  96   0   0   1  96  11  24  16  11  24   0   0  96   5  96   0
G |   0  96  90   5   0   7  24   5   7  24  96   0   0   5   0   0
T |   0   0   0   0   0  73  24  67  11  24   0  96   0   7   0   0

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updated Mon Jan 5 06:37:22 2026