3s8q_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE R-M CONTROLLER PROTEIN C.ESP1396I OL OPERATOR COMPLEX
reference	McGeehan et al. 'Nucleic 40 4158 2012
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.10, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3s8q_A interface=24,33,34,35,36,38,45, esfllskvsfvikkirlekgmtqEdlayksnlDRTYiSgiernsRnltikslelimkglevsdvvffemlikeilk > 3s8q_B interface=32,33,34,35,37,41,44, sfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkhd
interface signature	EDRTYSR/DRTYSRR

Estimated binding specificities ?

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# IC=15.417 IC/col=0.964 n_of_columns=16

specificity:

A |   0   0   3   0  96   0  24  10  68   6  68   0   3   0   0   0
C |   0   0   5   0   0  96  24  10   9   8   6   0   6  93  96   0
G |   0  96   3  96   0   0  24  11  13  10  10  96   5   0   0  96
T |  96   0  85   0   0   0  24  65   6  72  12   0  82   3   0   0

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updated Mon Sep 9 19:57:03 2024