interface graph thumbnail
legend  pdf

structure nameMUTM SLANTED COMPLEX 1
(Formamidopyrimidine-DNA glycosylase)
referenceVerdine et al. Proc.Natl.Acad.Sci.USA 109 1086 2012
sourceGeobacillus stearothermophilus
experimentX-ray (resolution=1.95, R-factor=0.196)
structural superfamilyN-terminal domain of MutM-like DNA repair proteins;S13-like H2TH domain;Glucocorticoid receptor-like DNA-binding domain;
sequence familyFormamidopyrimidineDNA glycosylase N; FormamidopyrimidineDNA glycosylase H2; Zinc finger found in FPG and IleRS;
reference complex3u6p_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRMRFRR

Estimated binding specificities ?

readout + contactlogo
# IC=4.212 IC/col=0.842 n_of_columns=5 specificity:   
A |   0  84  12  12   0
C |  84   0  12  12   0
G |   0  12  72  60   0
T |  12   0   0  12  96
scan!

home
updated Sat Aug 2 05:05:03 2025