3sqi_A : 3D-footprint complex

structure name	DNA BINDING DOMAIN OF NDC10 (KLLA0E03807P)
reference	Harrison et al. Nat.Struct.Mol.Biol. 19 48 2011
source	KLUYVEROMYCES LACTIS
experiment	X-ray (resolution=2.82, R-factor=0.196)
redundant complexes	3t79_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3sqi_A interface=124,233,242, mskldsllkelptrtahlyrsiwhkytewlktmpddlklflsqkyivkyiashddiakdplptcdamiwfsraldienndvlvlqqrlyglvkllefdysnviailqkisinlwnpstdslqsKhfktcqdklkllldfqwkfntnvsfedrttvslkdlqcilddengkcglahsskpnfvlvpnfqspftcpiftmavyyylrfhgvkkyykgdgyqilsqlehipiirgKsldqypreLtlgnwyptifkycqlpytkkhwfqvnqewpqfpdfsesdsentigipdfyiekmnrtklqpcpqvhvhlfptdlppdiqavfdllnsvlvtslpllyrvfpthdifldpslktpqniafltgtlpldiesqehllaqlidktgtvs
interface signature	KKL

Estimated binding specificities ?

contact

# IC=1.449 IC/col=0.181 n_of_columns=8

specificity:

A |   7  24  24  24  24  36  39   7
C |   7  24  24  24  24  16  14   7
G |   9  24  24  24  24  33  36   7
T |  73  24  24  24  24  11   7  75

scan!

Dendrogram of similar interfaces ?

matrix format

  
  KT------KT----LA------   L                              +3sqi_A    
                                                +---------1 
  KT------KT----LT------       +----------------2         +3t79_A    
                               !                ! 
  ----------RT--ET------     --4                +---------6gys_E    
                               ! 
  ----------TTQAATYGYAKT   L   !      +-------------------5jk0_B    
                               +------3 
  --RAFCKC--------------   L          +-------------------1flo_A

home
updated Mon Jun 29 17:00:10 2026