interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH THE ARTIFICIAL BASE PAIR DNAM-D5SICSTP
(DNA polymerase I, thermostable)
referenceDiederichs et al. Nat.Chem.Biol. 8 612 2012
sourceThermus aquaticus
experimentX-ray (resolution=2.10, R-factor=0.170)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family A; Taq polymerase, exonuclease;
reference complex6fbc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKTRNNH

Estimated binding specificities ?

contactlogo
# IC=2.674 IC/col=0.669 n_of_columns=4 specificity:   
A |   9   9   0   9
C |  11  67   0  69
G |  67  11  96   9
T |   9   9   0   9
scan!

home
updated Sat Aug 2 05:11:16 2025