3swm_ABD : 3D-footprint complex

structure name	THE NAC DOMAIN OF ANAC019 IN COMPLEX WITH DNA, GOLD DERIVATIVE
reference	Lo Leggio et al. Biochem.J. 444 395 2012
source	Arabidopsis thaliana
experiment	X-ray (resolution=4.25, R-factor=?)
structural superfamily	NAC domain;
reference complex	3swp_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3swm_A interface=73,82,83,84,86,106,115, pltqlslppgfrfyptdeelmvqylcrkaagydfslqliaeidlykfdpwvlpnkalfgekewyffsprdrpNrvagsgywKATgTdkiistegqrvgikkalvfYigkapkgtKtnwimheyrliepsddwvlcriykkq > 3swm_B interface=72,81,82,83,105,110,114, pltqlslppgfrfyptdeelmvqylcrkaagydfslqliaeidlykfdpwvlpnkalfgekewyffsprdpNrvagsgywKATgtdkiistegqrvgikkalvfYigkaPkgtKtnwimheyrliepsddwvlcriykkq > 3swm_D interface=83,85,114, pltqlslppgfrfyptdeelmvqylcrkaagydfslqliaeidlykfdpwvlpnkalfgekewyffsprdpnrvagsgywkaTgTdkiistegqrvgikkalvfyigkapkgtKtnwimheyrliepsddwvlcriykkq
interface signature	NKATTYK/NKATYPK/TTK

Estimated binding specificities ?

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# IC=12.402 IC/col=0.689 n_of_columns=18

specificity:

A |   0   0  19   0   0   6  24  24  19  24  24  24   0  89  24   0   0  96
C |   0   0   5  96   0  19  24  24  16  24  24  24  96   4  24   0  93   0
G |   0   0  66   0  96  19  24  24  15  24  24  24   0   3  24  96   3   0
T |  96  96   6   0   0  52  24  24  46  24  24  24   0   0  24   0   0   0

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updated Mon Sep 9 19:58:44 2024