interface graph thumbnail
legend  pdf

structure nameMUTM SET 1 TPG
(Formamidopyrimidine-DNA glycosylase)
referenceVerdine et al. J.Biol.Chem. 287 18044 2012
sourceGeobacillus stearothermophilus
experimentX-ray (resolution=1.77, R-factor=0.180)
structural superfamilyN-terminal domain of MutM-like DNA repair proteins;S13-like H2TH domain;Glucocorticoid receptor-like DNA-binding domain;
sequence familyFormamidopyrimidineDNA glycosylase N; FormamidopyrimidineDNA glycosylase H2; Zinc finger found in FPG and IleRS;
reference complex3u6p_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRRFR

Estimated binding specificities ?

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# IC=2.960 IC/col=0.740 n_of_columns=4 specificity:   
A |  19  13   0   0
C |  38  13   0   0
G |  19  14  96  96
T |  20  56   0   0
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updated Thu Sep 12 18:24:45 2024