3ufd_AB : 3D-footprint complex

structure name	C.ESP1396I BOUND TO ITS HIGHEST AFFINITY OPERATOR SITE OM
reference	McGeehan et al. 'Nucleic 40 10532 2012
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3ufd_A interface=33,34,35,36,38,45, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgiernsRnltikslelimkglevsdvvffemlikeilk > 3ufd_B interface=33,34,35,36,38,45, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgiernsRnltikslelimkglevsdvvffemlikeilkh
interface signature	DRTYSR/DRTYSR

Estimated binding specificities ?

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# IC=19.199 IC/col=1.067 n_of_columns=18

specificity:

A |   0   0   0  17   0  88   0   3  92   2  92   0   3   0   7  92   0  92
C |   0   0   1  63   0   1  96  11   3   1   1   0  11  96  15   1  96   2
G |   0  96   1  13  96   1   0   5   1   1   2  96  17   0  11   1   0   1
T |  96   0  94   3   0   6   0  77   0  92   1   0  65   0  63   2   0   1

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updated Mon Jan 5 06:55:38 2026