3ufd_AB : 3D-footprint complex

structure name	C.ESP1396I BOUND TO ITS HIGHEST AFFINITY OPERATOR SITE OM
reference	McGeehan et al. 'Nucleic 40 10532 2012
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3ufd_A interface=33,34,35,36,38,45, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgiernsRnltikslelimkglevsdvvffemlikeilk > 3ufd_B interface=33,34,35,36,38,45, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgiernsRnltikslelimkglevsdvvffemlikeilkh
interface signature	DRTYSR/DRTYSR

Estimated binding specificities ?

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# IC=19.581 IC/col=1.088 n_of_columns=18

specificity:

A |   1   0   1  13   0  80   0   5  90   1  90   0   1   0   1  96   0  90
C |   1   0   1  74   0   1  96   7   4   1   1   0  17  96   4   0  96   1
G |   1  96   0   5  96   7   0   1   1   4   1  96  15   0   7   0   0   1
T |  93   0  94   4   0   8   0  83   1  90   4   0  63   0  84   0   0   4

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updated Mon Sep 9 20:12:10 2024