3ufd_AB : 3D-footprint complex

structure name	C.ESP1396I BOUND TO ITS HIGHEST AFFINITY OPERATOR SITE OM
reference	McGeehan et al. 'Nucleic 40 10532 2012
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3ufd_A interface=33,34,35,36,38,45, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgiernsRnltikslelimkglevsdvvffemlikeilk > 3ufd_B interface=33,34,35,36,38,45, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgiernsRnltikslelimkglevsdvvffemlikeilkh
interface signature	DRTYSR/DRTYSR

Estimated binding specificities ?

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# IC=19.523 IC/col=1.085 n_of_columns=18

specificity:

A |   1   0   1  61   1  63   0   0  96   0  86   0   1   0   3  90   0  92
C |   1   0   0   9   0  13  96   0   0   1   0   0   5  96   8   1  96   3
G |   0  96   3  15  94   9   0   0   0   0  10  96  13   0  76   1   0   0
T |  94   0  92  11   1  11   0  96   0  95   0   0  77   0   9   4   0   1

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updated Wed Jun 24 18:39:48 2026