3ufd_AB : 3D-footprint complex

structure name	C.ESP1396I BOUND TO ITS HIGHEST AFFINITY OPERATOR SITE OM
reference	McGeehan et al. 'Nucleic 40 10532 2012
source	Enterobacter sp. RFL1396
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3ufd_A interface=33,34,35,36,38,45, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgiernsRnltikslelimkglevsdvvffemlikeilk > 3ufd_B interface=33,34,35,36,38,45, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgiernsRnltikslelimkglevsdvvffemlikeilkh
interface signature	DRTYSR/DRTYSR

Estimated binding specificities ?

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# IC=19.447 IC/col=1.080 n_of_columns=18

specificity:

A |   5   0   1  65   0  69   0   1  94   1  86   0   0   0   0  90   0  92
C |   1   0   1   7   0   7  96   6   0   4   0   0   3  96   3   4  96   0
G |   1  96   1  15  96   9   0   3   0   1   5  96   9   0  88   1   0   1
T |  89   0  93   9   0  11   0  86   2  90   5   0  84   0   5   1   0   3

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updated Tue Jul 29 23:13:14 2025