3ukg_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF RAP1/DNA COMPLEX (DNA-binding protein RAP1)
reference	Le Bihan et al. 'Nucleic 40 3197 2012
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.95, R-factor=0.198)
structural superfamily	Homeodomain-like;
sequence family	Rap1, DNAbinding; Myblike DNAbinding domain;
redundant complexes	4gfb
reference complex	6ldm_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3ukg_A interface=1,24,26,42,43,45,46,49,51,87,161,164,165,168,169,200,202,210,211,213, KasftdeedefildvvrknptrrTtHtlydeishyvpnhtgNSiRHrfRvYlskrleyvyevdkfgklvrdddgnliktkvlppsiKrkfsadedytlaiavkkqfyrdlfqidpdtgrspnhvpgsepnfaayrtqsrrgpiareffkhfaeehaahteNawRDrfRKfllaygiddyisyyeaekaqnrepepmknlTnRpkrpgvpTPgNynsaakrarn
interface signature	KTHNSRHRYKNRDRKTRTPN

Estimated binding specificities ?

readout + contact

# IC=15.015 IC/col=1.072 n_of_columns=14

specificity:

A |   6   0   0   0   0   4   4   4   0   0   0   4   1   4
C |   4   0   0   0   0   4   4   4   0   0   0   6   4   6
G |   4  96  96   0  96   6  84   4  96  96  92   4  87   4
T |  82   0   0  96   0  82   4  84   0   0   4  82   4  82

scan!

home
updated Sat Aug 2 05:19:31 2025