3uvf_B : 3D-footprint complex

structure name	EXPANDING LAGALIDADG ENDONUCLEASE SCAFFOLD DIVERSITY BY RAPIDLY SURVEYING EVOLUTIONARY SEQUENCE SPACE (Intron-encoded DNA endonuclease I-HjeMI)
reference	Scharenberg et al. 'Nucleic 40 4954 2012
source	Trichoderma reesei
experiment	X-ray (resolution=3.00, R-factor=0.285)
structural superfamily	Homing endonucleases;
sequence family	LAGLIDADG endonuclease;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3uvf_B interface=19,21,23,25,28,30,32,36,60,62,67,71,73,151,153,155,157,158,163,165,167,169,171,193,197,199,201,203,205,244, shmdltyaylvglfegdgYfSiTkKgkYlTyElgiElsikdvqliykikdilgvgkvsfRkRneieMvslRiRdknhlknfilpifdkypmlsnkqydylrfkdallsniiysddlpeyarsnesinsvdsiintsyfsawlvgfieaegCfStYkLNkdddYlIaSfDiAqkdgdilisaihkylsfttkiYldkTnCsRlKvTgvrsvknvvkfiqgapvkllgnkklqyklwikqlrkisRysekiqlpsny
interface signature	YSTKYTEERRMRRCSYLNYISDAYTCRKTR

Estimated binding specificities ?

readout + contact

# IC=15.540 IC/col=0.818 n_of_columns=19

specificity:

A |   4  96   0   4  96   0   0   6  24  24  24   0   0   0   0  24  12  68  85
C |   0   0   0   0   0   0   0  19  24  24  24   0  96   0   0  24  13   8   3
G |  20   0  96  92   0  96  96  17  24  24  24   0   0   0  86  24   6  10   5
T |  72   0   0   0   0   0   0  54  24  24  24  96   0  96  10  24  65  10   3

scan!

Dendrogram of similar interfaces ?

matrix format

home
updated Fri Sep 13 17:49:12 2024