| structure name | BOTH ZN FINGERS OF GATA1 BOUND TO PALINDROMIC DNA RECOGNITION SITE, P21 CRYSTAL FORM (Erythroid transcription factor) |
| reference | Wilkinson-White et al. 'To ? ? ? |
| source | Mus musculus |
| experiment | X-ray (resolution=1.98, R-factor=0.220) |
| structural superfamily | Glucocorticoid receptor-like DNA-binding domain; |
| sequence family | GATA zinc finger; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | PLRNLTLRNLLRR |
Estimated binding specificities ?
| readout + contact |  |
A | 0 0 96 0 0 96 0 96 10 64 C | 12 0 0 0 96 0 0 0 10 10 G | 10 0 0 0 0 0 96 0 12 10 T | 74 96 0 96 0 0 0 0 64 12scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: GATA1 | ||
| AGATAA | PubMed | 3vd6_C(7.16e-05) |
| GGTGATAAGG | PubMed | 3vd6_C(2.17e-04) |
| TGATAA | PubMed | 3vd6_C(2.74e-08) |
Dendrogram of similar interfaces ?
matrix formatPTLGRGNALCTTLTRGNALA--LTRTRT-- L +-------------3vd6_C +-------1 ----------TTLGRGNALA--LT----KT L +--2 +-------------3gat_A ! ! ------------VTRGNALAFTLTRG---- L --3 +---------------------6gat_A ! ----------TTLGRGNALA--LTRT---- L +------------------------3dfx_B |
home
updated Fri Sep 13 17:49:53 2024