interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF VIRB CORE DOMAIN COMPLEXED WITH THE CIS-ACTING SITE UPSTREAM ICSP PROMOTER
(Virulence regulon transcriptional activator VirB)
referenceWaltersperger et al. 'Nucleic 41 10529 2013
sourceShigella flexneri 2a
experimentX-ray (resolution=2.77, R-factor=0.243)
structural superfamilyKorB DNA-binding domain-like;
reference complex3vwb_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRATR

Estimated binding specificities ?

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# IC=3.101 IC/col=0.517 n_of_columns=6 specificity:   
A |   0   0  54  24  24  16
C |   0   0  13  24  24  13
G |   0  96  16  24  24  13
T |  96   0  13  24  24  54
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updated Thu Sep 12 18:31:46 2024