interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF VIRB CORE DOMAIN COMPLEXED WITH THE CIS-ACTING SITE UPSTREAM ICSP PROMOTER
(Virulence regulon transcriptional activator VirB)
referenceWaltersperger et al. 'Nucleic 41 10529 2013
sourceShigella flexneri 2a
experimentX-ray (resolution=2.77, R-factor=0.243)
structural superfamilyKorB DNA-binding domain-like;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRATR

Estimated binding specificities ?

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# IC=4.125 IC/col=0.688 n_of_columns=6 specificity:   
A |  96  24  24  24   0  96
C |   0  24  24  24  96   0
G |   0  12  24  12   0   0
T |   0  36  24  36   0   0
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updated Mon Dec 16 22:28:00 2024