interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF VIRB CORE DOMAIN COMPLEXED WITH THE CIS-ACTING SITE UPSTREAM ICSB PROMOTER
(Virulence regulon transcriptional activator VirB)
referenceWaltersperger et al. 'Nucleic 41 10529 2013
sourceShigella flexneri 2a
experimentX-ray (resolution=2.43, R-factor=0.265)
structural superfamilyKorB DNA-binding domain-like;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSRATRF

Estimated binding specificities ?

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# IC=5.831 IC/col=0.833 n_of_columns=7 specificity:   
A |   0   0  56  82  82   6  17
C |   0   0  17   4   4   4  69
G |   0  96  10   6   6   4   4
T |  96   0  13   4   4  82   6
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updated Mon Dec 16 22:28:07 2024