interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF VIRB CORE DOMAIN COMPLEXED WITH THE CIS-ACTING SITE UPSTREAM ICSB PROMOTER
(Virulence regulon transcriptional activator VirB)
referenceWaltersperger et al. 'Nucleic 41 10529 2013
sourceShigella flexneri 2a
experimentX-ray (resolution=2.43, R-factor=0.265)
structural superfamilyKorB DNA-binding domain-like;
reference complex3vwb_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSRATRF

Estimated binding specificities ?

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# IC=6.125 IC/col=0.875 n_of_columns=7 specificity:   
A |   5  96   6   5  20   0  96
C |   5   0   5   6  10  96   0
G |  65   0   5   5  16   0   0
T |  21   0  80  80  50   0   0
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updated Thu Sep 12 18:31:53 2024