interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF ADPA, THE GLOBAL TRANSCRIPTIONAL FACTOR, IN COMPLEX WITH A TARGET DNA
(ADPA)
referenceMiyazono et al. J.Biol.Chem. 288 31019 2013
sourceSTREPTOMYCES GRISEUS
experimentX-ray (resolution=2.95, R-factor=0.238)
structural superfamilyHomeodomain-like;
sequence familyBacterial regulatory helixturnhelix protei;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSRRTDR

Estimated binding specificities ?

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# IC=5.807 IC/col=0.968 n_of_columns=6 specificity:   
A |   0   0  13   0   0  13
C |   0   0  16  96   0  13
G |   0  96  54   0  96  57
T |  96   0  13   0   0  13
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: ADPA
TGGCGGGTTCPubMed3w6v_A(6.84e-05)

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updated Fri Sep 13 17:51:47 2024