3zpl_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SCO3205, A MARR FAMILY TRANSCRIPTIONAL REGULATOR FROM STREPTOMYCES COELICOLOR, IN COMPLEX WITH DNA
reference	Stevenson et al. 'Nucleic 41 7009 2013
source	STREPTOMYCES COELICOLOR
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	3zpl_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3zpl_E interface=71,72,73,75,76,97, ndeprwltaeeqlvwrsyieaatlledhldrqlqrdagmphvyygllvklaesprrrlrmtelakyakitRSRlSHavarlekngwvrredcpsdkRgqfailtdegyevlrrtapghvdavrqavfdrltpeqqkslgeimrivaeglqpseadlpwlr > 3zpl_F interface=66,67,68,70,71,92, wltaeeqlvwrsyieaatlledhldrqlqrdagmphvyygllvklaesprrrlrmtelakyakitRSRlSHavarlekngwvrredcpsdkRgqfailtdegyevlrrtapghvdavrqavfdrltpeqqkslgeimrivaeglqpsedlpwlr
interface signature	RSRSHR/RSRSHR

Estimated binding specificities ?

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# IC=11.683 IC/col=0.584 n_of_columns=20

specificity:

A |  88  74  24  24  14   0   0  87  24  24  24  24   3   0  81  85  24  24   3   3
C |   3  14  24  24  10  14   0   3  24  24  24  24   3  96   0   3  24  24   5   0
G |   2   5  24  24   0   0  96   3  24  24  24  24   3   0  14   3  24  24   0   1
T |   3   3  24  24  72  82   0   3  24  24  24  24  87   0   1   5  24  24  88  92

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updated Mon Sep 9 21:18:34 2024