3zql_AB : 3D-footprint complex

structure name	DNA-BOUND FORM OF TETR-LIKE REPRESSOR SIMR
reference	Schumacher et al. 'Nucleic 39 9433 2011
source	STREPTOMYCES ANTIBIOTICUS
experiment	X-ray (resolution=2.99, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	3zql_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3zql_A interface=44,45,55,56,57,59,60, vsiwmhpepagrrsarshrtlsrdqivraavkvadtegveaasMRrvaaelgagTMSlYYyvptkedlvelmvdevigetrlpdrpgpdwraaltlaanekralwlrhpwlatawrnghpvwgpnslrqqefvlgtlgvfdlqvdellsliglyngyvesfvrnevgwleearrtkvdmrewmrrsgpyaqqlvdsgeypmfarvlaetvaphmgpdqrfrsglerlldsigasld > 3zql_B interface=34,35,45,46,47,49,50, vsiwmhpeptlsrdqivraavkvadtegveaasMRrvaaelgagTMSlYYyvptkedlvelmvdevigetrlpdrpgpdwraaltlaanekralwlrhpwlatawrnghpvwgpnslrqqefvlgtlgvfdlqvdellsliglyngyvesfvrnevgwleearrtkvdmrewmrrsgpyaqqlvdsgeypmfarvlaetvaphmgpdqrfrsglerlldsigasld
interface signature	MRTMSYY/MRTMSYY

Estimated binding specificities ?

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# IC=14.689 IC/col=0.979 n_of_columns=15

specificity:

A |   4   5   5   3  96   0   3  24   3   0   0  85   5   5  96
C |   3   3   6   5   0  96   3  24  87   0   0   5  85   3   0
G |   0   3  82   3   0   0  85  24   3  96   0   3   3  82   0
T |  89  85   3  85   0   0   5  24   3   0  96   3   3   6   0

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updated Mon Sep 9 21:18:48 2024