3zql_CD : 3D-footprint complex

structure name	DNA-BOUND FORM OF TETR-LIKE REPRESSOR SIMR
reference	Schumacher et al. 'Nucleic 39 9433 2011
source	STREPTOMYCES ANTIBIOTICUS
experiment	X-ray (resolution=2.99, R-factor=?)
structural superfamily	Tetracyclin repressor-like, C-terminal domain;Homeodomain-like;
reference complex	3zql_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3zql_C interface=44,45,55,56,57,59,60, vsiwmhpepagrrsarshrtlsrdqivraavkvadtegveaasMRrvaaelgagTMSlYYyvptkedlvelmvdevigetrlpdrpgpdwraaltlaanekralwlrhpwlatawrnghpvwgpnslrqqefvlgtlgvfdlqvdellsliglyngyvesfvrnevgwleearrtkvdmrewmrrsgpyaqqlvdsgeypmfarvlaetvaphmgpdqrfrsglerlldsigasld > 3zql_D interface=34,35,45,46,47,49,50, vsiwmhpeptlsrdqivraavkvadtegveaasMRrvaaelgagTMSlYYyvptkedlvelmvdevigetrlpdrpgpdwraaltlaanekralwlrhpwlatawrnghpvwgpnslrqqefvlgtlgvfdlqvdellsliglyngyvesfvrnevgwleearrtkvdmrewmrrsgpyaqqlvdsgeypmfarvlaetvaphmgpdqrfrsglerlldsigasld
interface signature	MRTMSYY/MRTMSYY

Estimated binding specificities ?

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# IC=14.555 IC/col=0.970 n_of_columns=15

specificity:

A |   0   1   3  10  96   0   0  24   3   0   0  78  10   3  96
C |   0   7   3   3   0  96   3  24  93   0   0   5  64  10   0
G |   0   0  85  10   0   0  92  24   0  96   0   3  14  74   0
T |  96  88   5  73   0   0   1  24   0   0  96  10   8   9   0

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updated Mon Sep 9 21:19:02 2024