3zql_CD : 3D-footprint complex

structure name	DNA-BOUND FORM OF TETR-LIKE REPRESSOR SIMR
reference	Schumacher et al. 'Nucleic 39 9433 2011
source	STREPTOMYCES ANTIBIOTICUS
experiment	X-ray (resolution=2.99, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3zql_C interface=44,45,55,56,57,59,60, vsiwmhpepagrrsarshrtlsrdqivraavkvadtegveaasMRrvaaelgagTMSlYYyvptkedlvelmvdevigetrlpdrpgpdwraaltlaanekralwlrhpwlatawrnghpvwgpnslrqqefvlgtlgvfdlqvdellsliglyngyvesfvrnevgwleearrtkvdmrewmrrsgpyaqqlvdsgeypmfarvlaetvaphmgpdqrfrsglerlldsigasld > 3zql_D interface=34,35,45,46,47,49,50, vsiwmhpeptlsrdqivraavkvadtegveaasMRrvaaelgagTMSlYYyvptkedlvelmvdevigetrlpdrpgpdwraaltlaanekralwlrhpwlatawrnghpvwgpnslrqqefvlgtlgvfdlqvdellsliglyngyvesfvrnevgwleearrtkvdmrewmrrsgpyaqqlvdsgeypmfarvlaetvaphmgpdqrfrsglerlldsigasld
interface signature	MRTMSYY/MRTMSYY

Estimated binding specificities ?

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# IC=14.222 IC/col=0.948 n_of_columns=15

specificity:

A |   0   1   3  13  96   0   3  24   5   0   0  66  11   3  96
C |   0   3   3   3   0  96   3  24  88   0   0   5  70   7   0
G |   0   0  87   7   0   0  88  24   3  96   0  14   8  73   0
T |  96  92   3  73   0   0   2  24   0   0  96  11   7  13   0

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updated Fri Dec 13 18:53:13 2024