4a04_AB : 3D-footprint complex

structure name	STRUCTURE OF THE DNA-BOUND T-BOX DOMAIN OF HUMAN TBX1, A TRANSCRIPTION FACTOR ASSOCIATED WITH THE DIGEORGE SYNDROME
reference	De Mesmaeker et al. Proteins 80 655 2012
source	HOMO SAPIENS
experiment	X-ray (resolution=2.58, R-factor=?)
structural superfamily	p53-like transcription factors;
reference complex	4a04_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4a04_A interface=29,158,159,175,179, gvsvqlemkalwdefnqlgtemivtkagRrmfptfqvklfgmdpmadymllmdfvpvddkryryafhssswlvagkadpatpgrvhyhpdspakgaqwmkqivsfdklkltnnllddnghiilnsmhryqprfhvvyvdprenfktfvfeetrftavTAyqnhritqlkiasnpFakgFrd > 4a04_B interface=30,167,168,184,188, ggvsvqlemkalwdefnqlgtemivtkagRrmfptfqvklfgmdpmadymllmdfvpvddkryryafhssswlvagkadpatpgrvhyhpdspakgaqwmkqivsfdklkltnnllddnghiilnsmhryqprfhvvyvdprkdsekyaeenfktfvfeetrftavTAyqnhritqlkiasnpFakgFrd
interface signature	RTAFF/RTAFF

Estimated binding specificities ?

readout + contact

# IC=10.597 IC/col=0.589 n_of_columns=18

specificity:

A |   1  24  24  24   0  96   4   5  24  59  13   7   0   0  24  24  24  90
C |   1  24  24  24  96   0  90  86  24  11   9  17   0   0  24  24  24   4
G |   1  24  24  24   0   0   1   4  24   9  65  59   0  96  24  24  24   1
T |  93  24  24  24   0   0   1   1  24  17   9  13  96   0  24  24  24   1

scan!

home
updated Wed Jul 30 00:24:53 2025