4a04_AB : 3D-footprint complex

structure name	STRUCTURE OF THE DNA-BOUND T-BOX DOMAIN OF HUMAN TBX1, A TRANSCRIPTION FACTOR ASSOCIATED WITH THE DIGEORGE SYNDROME
reference	De Mesmaeker et al. Proteins 80 655 2012
source	HOMO SAPIENS
experiment	X-ray (resolution=2.58, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4a04_A interface=29,158,159,175,179, gvsvqlemkalwdefnqlgtemivtkagRrmfptfqvklfgmdpmadymllmdfvpvddkryryafhssswlvagkadpatpgrvhyhpdspakgaqwmkqivsfdklkltnnllddnghiilnsmhryqprfhvvyvdprenfktfvfeetrftavTAyqnhritqlkiasnpFakgFrd > 4a04_B interface=30,167,168,184,188, ggvsvqlemkalwdefnqlgtemivtkagRrmfptfqvklfgmdpmadymllmdfvpvddkryryafhssswlvagkadpatpgrvhyhpdspakgaqwmkqivsfdklkltnnllddnghiilnsmhryqprfhvvyvdprkdsekyaeenfktfvfeetrftavTAyqnhritqlkiasnpFakgFrd
interface signature	RTAFF/RTAFF

Estimated binding specificities ?

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# IC=10.632 IC/col=0.591 n_of_columns=18

specificity:

A |   1  24  24  24   0  96   9   7  11  24  23   1   0   0  24  24  24  94
C |   1  24  24  24  96   0  74  79  21  24  13   1   0   0  24  24  24   2
G |   1  24  24  24   0   0   8   5   7  24  51  90   0  96  24  24  24   0
T |  93  24  24  24   0   0   5   5  57  24   9   4  96   0  24  24  24   0

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updated Fri Dec 13 18:53:46 2024