4aa6_AB : 3D-footprint complex

structure name	THE OESTROGEN RECEPTOR RECOGNIZES AN IMPERFECTLY PALINDROMIC RESPONSE ELEMENT THROUGH AN ALTERNATIVE SIDE-CHAIN CONFORMATION
reference	Schwabe et al. Structure 3 201 1995
source	HOMO SAPIENS
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	1hcq_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4aa6_A interface=22,25,26,29,30, trycavcndyasgyhygvwscEgcKAffKRsihndymcpatnqctidknrrkscqacrlrkcyevgmmk > 4aa6_B interface=22,25,26,29,30, trycavcndyasgyhygvwscEgcKAffKRsiqghdymcpatnqctidknrrkscqacrlrkcyevgmmk
interface signature	EKAKR/EKAKR

Estimated binding specificities ?

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# IC=9.880 IC/col=0.760 n_of_columns=13

specificity:

A |   0   0   6   0  72  24  24  24   6   0  84   0   6
C |   0   0   6  96   6  24  24  24  12   0  12  96  66
G |  96  96   6   0   6  24  24  24   6  96   0   0   6
T |   0   0  78   0  12  24  24  24  72   0   0   0  18

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updated Mon Sep 9 21:29:03 2024