4aa6_EF : 3D-footprint complex

structure name	THE OESTROGEN RECEPTOR RECOGNIZES AN IMPERFECTLY PALINDROMIC RESPONSE ELEMENT THROUGH AN ALTERNATIVE SIDE-CHAIN CONFORMATION
reference	Schwabe et al. Structure 3 201 1995
source	HOMO SAPIENS
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	Glucocorticoid receptor-like DNA-binding domain;
reference complex	1hcq_E
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4aa6_E interface=21,24,25,28,29, rycavcndyasgyhygvwscEgcKAffKRsiqgdymcpatnqctidknrrkscqacrlrkcyevgmmk > 4aa6_F interface=22,25,26,29,30, trycavcndyasgyhygvwscEgcKAffKRsiqghndymcpatnqctidkrkscqacrlrkcyevgmmk
interface signature	EKAKR/EKAKR

Estimated binding specificities ?

readout + contact

# IC=10.245 IC/col=0.788 n_of_columns=13

specificity:

A |   0   0   0   0  73  24  24  24   9   0  73   0   9
C |   0   0   0  96   7  24  24  24   7   0   9  96   7
G |  96  96   0   0   9  24  24  24   7  96   7   0   7
T |   0   0  96   0   7  24  24  24  73   0   7   0  73

scan!

home
updated Mon Sep 9 21:29:13 2024