4awl_B : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	THE NF-Y TRANSCRIPTION FACTOR IS STRUCTURALLY AND FUNCTIONALLY A SEQUENCE SPECIFIC HISTONE (NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA)
reference	Mantovani et al. 'Cell(Cambridge,Mass.)' 152 132 2013
source	HOMO SAPIENS
experiment	X-ray (resolution=3.08, R-factor=0.194)
structural superfamily	Histone-fold;
sequence family	Histonelike transcription factor CBF/;
multimeric complexes	4awl_ABC
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4awl_B interface=11, freqdiylpiAnvarimknaipqtgkiakdakecvqecvsefisfitseaserchqekrktingedilfamstlgfdsyveplklylqkfre

  
  ----RA--             +-----------------------------7e9c_F    
                     +-5 
  ----RT--         +-6 +-----------------------------6px1_A    
                   ! ! 
  ----RC--       +-7 +-----------------------------7ux9_E    
                 ! ! 
  ----RG--       ! +-----------------------------8upf_G    
                 ! 
  ----RT--     --8                            +8u14_G    
                 !                  +---------3 
  HGRTRG--       !                  !         +8rbx_V    
                 +------------------4 
  ----RARA                          !            +6a5l_g    
                                    !          +-1 
  ----RG--                          +----------2 +8txv_G    
                                               ! 
  ----RC--                                     +7yqk_C

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updated Sat Jan 10 06:51:45 2026