interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameTHE NF-Y TRANSCRIPTION FACTOR IS STRUCTURALLY AND FUNCTIONALLY A SEQUENCE SPECIFIC HISTONE
(NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA)
referenceMantovani et al. 'Cell(Cambridge,Mass.)' 152 132 2013
sourceHOMO SAPIENS
experimentX-ray (resolution=3.08, R-factor=0.194)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/;
multimeric complexes4awl_ABC
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RA--               +-----------------------------6g0l_D    
                     +-5 
  RT----           +-6 +-----------------------------8grq_A    
                   ! ! 
  RT----         +-7 +-----------------------------8hr1_E    
                 ! ! 
  RA--RA         ! !                             +6a5l_g    
                 ! +-----------------------------1 
  RG----         !                               +8txv_G    
               +-8 
  RA----       ! !                             +1zla_C    
               ! !              +--------------2 
  RG----       ! !         +----3              +8ox0_C    
             --9 !         !    ! 
  RG----       ! +---------4    +--------------5x0y_G    
               !           ! 
  RG----       !           +-------------------8jla_C    
               ! 
  RT----       +-----------------------------8u14_G    
             

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updated Sun Aug 3 07:51:56 2025