4awl_B : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	THE NF-Y TRANSCRIPTION FACTOR IS STRUCTURALLY AND FUNCTIONALLY A SEQUENCE SPECIFIC HISTONE (NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA)
reference	Mantovani et al. 'Cell(Cambridge,Mass.)' 152 132 2013
source	HOMO SAPIENS
experiment	X-ray (resolution=3.08, R-factor=0.194)
structural superfamily	Histone-fold;
sequence family	Histonelike transcription factor CBF/;
multimeric complexes	4awl_ABC
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4awl_B interface=11, freqdiylpiAnvarimknaipqtgkiakdakecvqecvsefisfitseaserchqekrktingedilfamstlgfdsyveplklylqkfre

  
  ------RT       +-----------------------------7lya_E    
                 ! 
  ------RA       !                            +7k78_E    
                 !              +-------------2 
  ------RT       !              !             +7wlr_E    
               --7           +--3 
  ------RA       !           !  !              +6t7a_C    
                 !    +------4  +--------------1 
  ------RT       !    !      !                 +7lyb_G    
                 !  +-5      ! 
  ------RT       !  ! !      +-----------------7zs9_e    
                 +--6 ! 
  RAETRT--          ! +------------------------4ne1_p    
                    ! 
  ------RT          +--------------------------1u35_G

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updated Fri Sep 13 18:03:25 2024