interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameTHE NF-Y TRANSCRIPTION FACTOR IS STRUCTURALLY AND FUNCTIONALLY A SEQUENCE SPECIFIC HISTONE
(NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA)
referenceMantovani et al. 'Cell(Cambridge,Mass.)' 152 132 2013
sourceHOMO SAPIENS
experimentX-ray (resolution=3.08, R-factor=0.194)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/; Core histone H2A/H2B/H3/H4;
multimeric complexes4awl_ABC
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  --RT----                                  +8u14_G    
                                          +-1 
  --RA----                      +---------3 +1zla_C    
                                !         ! 
  --RG----                  +---4         +5x0y_G    
                            !   ! 
  --RA--RA                +-5   +----------6a5l_g    
                          ! ! 
  --RG----                ! !              +8txv_G    
                      +---6 +--------------2 
  --RG----            !   !                +8ox0_C    
                   +--7   ! 
  --RG----         !  !   +---------------8jla_C    
                 +-8  ! 
  ----RA--       ! !  +-------------------6g0l_D    
               --9 ! 
  --RT----       ! +----------------------8grq_A    
                 ! 
  LCRT----       +-----------------------8hr1_E    
               

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updated Sun Aug 3 07:52:42 2025