4c8k_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A PARTIALLY CLOSED COMPLEX WITH THE ARTIFICIAL BASE PAIR D5SICS-DNAMTP (DNA POLYMERASE I, THERMOSTABLE)
reference	Romesberg et al. J.Am.Chem.Soc. 135 18637 2013
source	THERMUS AQUATICUS
experiment	X-ray (resolution=2.17, R-factor=0.183)
structural superfamily	DNA/RNA polymerases;Ribonuclease H-like;
sequence family	DNA polymerase family A; Taq polymerase, exonuclease;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4c8k_A interface=248,252,281,288,291,323,379,458,462,492, aleeapwpppegafvgfvlsrkepmwadllalaaarggrvhrapepykalrdlkeargllakdlsvlalreglglppgddpmllaylldpsnttpegvarryggewteeageraalserlfanlwgrlegeerllwlyreverplsavlahmeatgvrldvaylralslevaeeiarleaevfrlaghpfnlnsrdqlervlfdelglpaigktektgkrstsaavlealreahpivekilqyreltKlksTyidplpdlihprtgrlhtrfnqtatatgRlsssdpNlqNipvrtplgqrirrafiaeegwllvaldysqiElrvlahlsgdenlirvfqegrdihtetaswmfgvpreavdplmrraaktinfgvlYgmsahrlsqelaipyeeaqafieryfqsfpkvrawiektleegrrrgyvetlfgrrryvpdlearvksvreaaermafNmpvQgtaadlmklamvklfprleemgarmllqvHdelvleapkeraeavarlakevmegvyplavplevevgigedwlsake
interface signature	KTRNNEYNQH

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# IC=2.849 IC/col=0.712 n_of_columns=4

A |  24   8   0   8
C |  16  80   0  72
G |  48   8  96   8
T |   8   0   0   8

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updated Mon Dec 16 22:53:38 2024