Estimated binding specificities ?

structure nameTHE STRUCTURE OF PYROCOCCUS FURIOSUS SFSA IN COMPLEX WITH DNA
(Sugar fermentation stimulation protein homolog)
referenceBaker et al. 'To ? ? ?
sourcePyrococcus furiosus
experimentX-ray (resolution=2.20, R-factor=0.242)
structural superfamilyPhospholipase D/nuclease;
sequence familySugar fermentation stimulation protein;
multimeric complexes4dav_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
contactlogo
# IC=2.452 IC/col=0.613 n_of_columns=4 specificity:   
A |  19   4  14   0
C |  38   4  54   0
G |  19  84  14   0
T |  20   4  14  96
scan!

Dendrogram of similar interfaces ?

matrix format
  
  NGRCFTLTTT--EG--RC----RT--   L          +-------------------4dav_B    
                                     +----2 
  ----------LT--------------       +-3    +-------------------5gke_A    
                                   ! ! 
  --------------RT--NG----RG   L --4 +------------------------3odh_F    
                                   ! 
  ------------------NG----RG   L   !               +----------3bam_A    
                                   +---------------1 
  --------------------YAFG--   L                   +----------1dfm_A

home
updated Fri Sep 13 18:07:40 2024