interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH 5-(AMINOPENTINYL)- DTTP
(DNA polymerase I, thermostable)
referenceDiederichs et al. J.Am.Chem.Soc. 134 11840 2012
sourceThermus aquaticus
experimentX-ray (resolution=1.90, R-factor=0.181)
structural superfamilyDNA/RNA polymerases;Ribonuclease H-like;
sequence familyDNA polymerase family A; Taq polymerase, exonuclease;
reference complex6fbc_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureKTRNNH

Estimated binding specificities ?

contactlogo
# IC=2.849 IC/col=0.712 n_of_columns=4 specificity:   
A |   8   0   8  24
C |   8  96   8  48
G |  72   0  80   8
T |   8   0   0  16
scan!

home
updated Sat Aug 2 05:58:09 2025