| structure name | CRYSTAL STRUCTURE OF MBD4 CATALYTIC DOMAIN BOUND TO ABASIC DNA (Methyl-CpG-binding domain protein 4) |
| reference | Manvilla et al. J.Mol.Biol. 420 164 2012 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.76, R-factor=?) |
| structural superfamily | DNA-glycosylase; |
| redundant complexes | 4ew4 |
| reference complex | 4ofa_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix formatLTVTQTLTNGRGTG----------LG----LC----------------YTNT--KT +4evv_A +-----13 ----------RGTG----------LC------------------------------ ! +4dk9_A +-21 ----------QGCGTA--------LC------------------------------ ! ! +-1orn_A ! +----17 ----------QC--RG--------YC------------------------------ L ! +-3g0q_A +-23 ----------QTLAHGAT--------------KT---------------------- ! ! +-3s6i_A ! ! +---18 ----------NA--RA------------FGRC------------------------ L ! ! ! ! +3i0w_A +------24 +--20 +-15 ----------NCNANARC----------YGRC------------------------ ! ! ! +2xhi_A ! ! ! ----------LG-------------------------------------------- +---25 ! +------3cwt_D ! ! ! --------AGNG----------RCFC------RG------------------RA-- ! ! +-------------3knt_A ! ! --------AA--LA----ITHT----KT---------------------------- ! +---------------------2ofi_A ! --------HTRT------------------------NCSTNARG------------ L ! +1k61_B ! +-5 ------RT----------------------------NT--NAIARG---------- L ! +-7 +1puf_B ! ! ! ------------------------------------NT--NA--RG---------- L ! ! +1b8i_B ! ! --------------------------------------KGNA-------------- L ! ! +2hos_A ! ! +-1 ------------------------------------IAQTNAMC------------ L ! ! +-4 +2h1k_B -26 +-16 ! ! ------------------------------------IAQCNAYA------------ L ! ! ! ! +1nk3_P ! ! ! ! ------------------------------------IAKGNA-------------- L ! ! ! +-9 +2hdd_A ! ! ! ! ! +-2 ------------------------------------VASGNA-------------- L ! ! ! ! ! +-6 +3cmy_A ! ! ! ! ! ! ! ------------------------------------ITQCNAMC------------ L ! ! ! ! +-8 +2r5y_A ! ! +-14 ! ----------------------------------KTIAQCNA----RT-------- L ! +-----19 ! +1ig7_A ! ! ! ! ------------------------------------VTQTNAMTKTRT-------- L ! ! ! ! +1jgg_B ! ! ! ! +-3 --------RA--------------------------ITQCNAMC------------ L ! ! ! +-12 +1b8i_A ! ! ! ! ----------------------------------KGITQGNAMC------------ L +---------------22 ! +9ant_B ! ! ------------------------------------VAQTNA-------------- L ! ! +1fjl_B ! +-10 ----------RT------------------------NCSTNARG------------ L ! +1mnm_C ! ----------------------------------RTVAIANAMCRG---------- L ! +1le8_A +--------11 ------------------------------------IAQCNAYC------------ L +3rkq_B |
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updated Thu Sep 12 18:58:44 2024