| structure name | RESTRICTION ENDONUCLEASE DPNI IN COMPLEX WITH TARGET DNA (TYPE-2 RESTRICTION ENZYME DPNI) |
| reference | Bujnicki et al. 'Nucleic 40 7563 2012 |
| source | STREPTOCOCCUS PNEUMONIAE |
| experiment | X-ray (resolution=2.05, R-factor=0.199) |
| structural superfamily | Zinc beta-ribbon; |
| sequence family | Damreplacing family; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | SNHEKRQQ |
Estimated binding specificities ?
| readout + contact |  |
A | 0 57 13 0 0 C | 0 13 13 96 96 G | 96 13 16 0 0 T | 0 13 54 0 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: DPNI | ||
| TCTAGATCTAGA | PubMed | 4esj_A(1.02e-02) |
| GAATGGATCCTAATGAGATC | PubMed | 4esj_A(1.32e-04) |
Dendrogram of similar interfaces ?
matrix format--SG--------NGHT----ETKG--RGQG--QT------------ L +--------------------4esj_A +--8 QA------------------------------------------NG ! ! +-7k63_U ! +------------------3 ----RGRTKG------------------------------------ L ! +-6lui_A ! ----------RC--------------------------------SG ! +---7cow_T +-10 +-------------4 --------------------------NASTRTHT--ST-------- L ! ! ! +---3co7_C ! ! +--7 --------------------NT--TCTA--------------RT-- L ! ! ! ! +--------5zux_A ! ! ! +--------5 --------------------------------YGRG---------- ! +--9 +--------4wcg_A ! ! --------RC------------------------------------ +-11 ! +6l9z_S ! ! ! +---------------2 --------------------------NA--RAHT--STLT------ L ! ! +----6 +2a07_J ! ! ! --------------------------NASTRGHTNTSTLT------ L ! ! +---------------7fj2_B +-12 ! ----------------STRGMCTT--RT------------------ L ! ! ! +4u0y_B ! ! +-------------------------1 ----------------SCRGHC----RT------------QA---- L -13 ! +5d4s_B ! ! ----------------------KT----RG--RGYA---------- L ! +----------------------------3wts_C ! --------------------DCKT----RG--RGYA---------- L +----------------------------7jsa_J |
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updated Thu Sep 12 19:11:30 2024