4esv_GHIJKL : 3D-footprint complex

structure name	A NEW TWIST ON THE TRANSLOCATION MECHANISM OF HELICASES FROM THE STRUCTURE OF DNAB WITH ITS SUBSTRATES
reference	Itsathitphaisarn et al. 'Cell(Cambridge,Mass.)' 151 267 2012
source	Geobacillus stearothermophilus
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;N-terminal domain of DnaB helicase;
reference complex	4esv_L
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4esv_G interface= rippqsieaeqavlgavfldpaalvpaseilipedfyraahqkifhamlrvadrgepvdlvtvtaelaaseqleeiggvsylseladavptaanveyyariveeksvlrrlirtatsiaqdgytredeidvlldeadrkimevsfknikdilvqtydniemlitgiptgfteldrmtsgfqrsdliivaarpsvgktafalniaqnvatktnenvaifslemsaqqlvmrmlcaegninaqnlrtgkltpedwgkltmamgslsnagiyiddtpsirvsdirakcrrlkqesglgmividylqliqgsgrskenrqqevseisrslkalarelevpvialsqlsrsveqrqdkrpmmsdiresgsieqdadivaflyrddyynkdsenkniieiiiakqrngpvgtvqlafikeynkfvnl > 4esv_H interface=316, ippqsieaeqavlgavfldpaalvpaseilipedfyraahqkifhamlrvadrgepvdlvtvtaelaaseqleeiggvsylseladavptaanveyyariveeksvlrrlirtatsiaqdgytredeidvlldeadrkimefknikdilvqtydniemlhnritgiptgfteldrmtsgfqrsdliivaarpsvgktafalniaqnvatktnenvaifslemsaqqlvmrmlcaegninaqnlrtgkltpedwgkltmamgslsnagiyiddtpsirvsdirakcrrlkqesglgmividylqliqgsgrskenrQqevseisrslkalarelevpvialsqlsrsveqrqdkrpmmsdiresgsieqdadivaflyrddyynkdsenkniieiiiakqrngpvgtvqlafikeynkfvnlerrf > 4esv_I interface= ippqsieaeqavlgavfldpaalvpaseilipedfyraahqkifhamlrvadrgepvdlvtvtaelaaseqleeiggvsylseladavptaanveyyariveeksvlrrlirtatsiaqdgytredeidvlldeadrkimefknikdilvqtydniemlitgiptgfteldrmtsgfqrsdliivaarpsvgktafalniaqnvatktnenvaifslemsaqqlvmrmlcaegninaqnlrtgkltpedwgkltmamgslsnagiyiddtpsirvsdirakcrrlkqesglgmividylqliqgsgrskenrqqeVseisrslkalarelevpvialsqlsrsveqrqdkrpmmsdiresgsieqdadivaflyrddyynkdsenkniieiiiakqrngpvgtvqlafikeynkfvnl > 4esv_J interface=309, ieaeqavlgavfldpaalvpaseilipedfyraahqkifhamlrvadrgepvdlvtvtaelaaseqleeiggvsylseladavptaanveyyariveeksvlrrlirtatsiaqdgytredeidvlldeadrkimevsqfknikdilvqtydniemlitgiptgfteldrmtsgfqrsdliivaarpsvgktafalniaqnvatktnenvaifslemsaqqlvmrmlcaegninaqnlrtgkltpedwgkltmamgslsnagiyiddtpsirvsdirakcrrlkqesglgmividylqliqgsgrskeNrqqevseisrslkalarelevpvialsqlsrsveqrqdkrpmmsdiresgsieqdadivaflyrddyynkdsenkniieiiiakqrngpvgtvqlafikeynkfvnl > 4esv_K interface=314, rippqsieaeqavlgavfldpaalvpaseilipedfyraahqkifhamlrvadrgepvdlvtvtaelaaseqleeiggvsylseladavptaanveyyariveeksvlrrlirtatsiaqdgytredeidvlldeadrkimegafknikdilvqtydniemlitgiptgfteldrmtsgfqrsdliivaarpsvgktafalniaqnvatktnenvaifslemsaqqlvmrmlcaegninaqnlrtgkltpedwgkltmamgslsnagiyiddtpsirvsdirakcrrlkqesglgmividylqliqgsgrskeNrqqevseisrslkalarelevpvialsqlsrsveqrqdkrpmmsdiresgsieqdadivaflyrddyynkdsenkniieiiiakqrngpvgtvqlafikeynkfvnl > 4esv_L interface=312,314,349, ppqsieaeqavlgavfldpaalvpaseilipedfyraahqkifhamlrvadrgepvdlvtvtaelaaseqleeiggvsylseladavptaanveyyariveeksvlrrlirtatsiaqdgytredeidvlldeadrkimevafknikdilvqtydniemlitgiptgfteldrmtsgfqrsdliivaarpsvgktafalniaqnvatktnenvaifslemsaqqlvmrmlcaegninaqnlrtgkltpedwgkltmamgslsnagiyiddtpsirvsdirakcrrlkqesglgmividylqliqgsgrskeNrQqevseisrslkalarelevpvialsqlsrsveqrQdkrpmmsdiresgsieqdadivaflyrddyynkdsenkniieiiiakqrngpvgtvqlafikeynkfvnl
interface signature	/Q/V/N/N/NQQ

Estimated binding specificities ?

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# IC=3.142 IC/col=0.242 n_of_columns=13

specificity:

A |   0   0  24  24  24  13  24  24  24  24  24  24  16
C |   0   0  24  24  24  13  24  24  24  24  24  24  13
G |   0   0  24  24  24  13  24  24  24  24  24  24  13
T |  96  96  24  24  24  57  24  24  24  24  24  24  54

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updated Fri Dec 13 19:27:06 2024