| structure name | MOUSE MBD4 GLYCOSYLASE DOMAIN IN COMPLEX WITH A G:5HMU (5- HYDROXYMETHYLURACIL) MISMATCH (Methyl-CpG-binding domain protein 4) |
| reference | Hashimoto et al. 'Nucleic 40 8276 2012 |
| source | Mus musculus |
| experiment | X-ray (resolution=2.39, R-factor=0.279) |
| structural superfamily | DNA-glycosylase; |
| redundant complexes | 4ew4 4evv |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix format--NGRGTG------LG----LCRG-------------- +-------4ew0_A ! ----QGCGTA----LC---------------------- +---20 +-1orn_A ! ! +--14 --------------YG---------------------- L ! +-17 +-5kn8_A +-22 ! ----QGTGRA----YC----RG---------------- ! ! +-----6q0c_A ! ! ----LG--------------KG---------------- ! +------------3cw7_C +------------24 ----QTLAHGAT----------KT-------------- ! ! +3s6i_A ! ! +-11 --QGKGLGSGAGSC--LTKC------------------ ! ! +-13 +4b21_A ! ! ! ! ----NG--RG--------FGRC---------------- ! +---------16 +-4ejy_A ! ! ----NCNANARC------YGRC---------------- ! +--2xhi_A ! --------------------------NT----NA--RG L ! +1b8i_B ! +--------7 --------------------------NT----NAIARG L ! ! +1b72_B ! +----21 --RA----------------------IT--QCNAMC-- L ! ! ! +1b8i_A ! ! +--------8 --------------------------IT--QCNAMC-- L ! ! +2r5y_A -27 ! --RT----------------------NT----NAIARG L ! ! +4cyc_B ! ! +-5 RT------------------------NT----NAIARG L ! ! +-9 +1puf_B ! ! ! ! --HTRT--------------------NC--STNARG-- L ! +-------25 +---------15 +1k61_B ! ! ! ! ! --------------------------NC--ITNA---- L ! ! ! ! +-6fqq_E ! ! ! ! ------------------------KGSA--QA------ L ! ! ! ! +6j5b_C ! ! ! ! +-1 --------------------------VA--QTNA---- L ! ! ! ! +-4 +1fjl_B ! ! ! ! ! ! --------------------------IA--QCNAYA-- L ! ! ! ! +----10 +1nk3_P ! ! +-23 ! ! --------------------------IT--QTNAMG-- L ! ! ! ! ! +5zjt_E ! ! ! ! +-6 --RT--------------------IC--QTNA------ L +--26 ! ! +5edn_J ! ! +-18 ------------------------RTVA--IANAMCRG L ! ! ! ! +1le8_A ! ! ! ! +-2 --------------------------VA--SGNA---- L ! ! ! ! +-3 +3cmy_A ! +----19 ! ! ! --------------------------VA--QTNA---- L ! ! +---12 +5hod_A ! ! ! --------------------------IT--QCNAACRG L ! ! +6a8r_A ! ! ----RT--------------------NC--STNARG-- L ! +------1mnm_C ! ------------------------RTVA--ITNAMCRG L +-----------------------1yrn_A |
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updated Mon Dec 16 23:14:08 2024