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structure nameMOUSE MBD4 GLYCOSYLASE DOMAIN IN COMPLEX WITH A G:5HMU (5- HYDROXYMETHYLURACIL) MISMATCH
(Methyl-CpG-binding domain protein 4)
referenceHashimoto et al. 'Nucleic 40 8276 2012
sourceMus musculus
experimentX-ray (resolution=2.39, R-factor=0.279)
structural superfamilyDNA-glycosylase;
redundant complexes4ew4 4evv
reference complex4ofa_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  --NGRGTG------LG----LCRG--------------                             +-------4ew0_A    
                                                                     !  
  ----QGCGTA----LC----------------------                        +---20      +-1orn_A    
                                                                !    !  +--14  
  --------------YG----------------------   L                    !    +-17   +-5kn8_A    
                                                             +-22       !  
  ----QGTGRA----YC----RG----------------                     !  !       +-----6q0c_A    
                                                             !  !  
  ----LG--------------KG----------------                     !  +------------3cw7_C    
                                               +------------24  
  ----QTLAHGAT----------KT--------------       !             !                +3s6i_A    
                                               !             !             +-11  
  --QGKGLGSGAGSC--LTKC------------------       !             !          +-13  +4b21_A    
                                               !             !          !  !  
  ----NG--RG--------FGRC----------------       !             +---------16  +-4ejy_A    
                                               !                        !  
  ----NCNANARC------YGRC----------------       !                        +--2xhi_A    
                                               !  
  --------------------------NT----NA--RG   L   !                           +1b8i_B    
                                               !                  +--------7 
  --------------------------NT----NAIARG   L   !                  !        +1b72_B    
                                               !            +----21  
  --RA----------------------IT--QCNAMC--   L   !            !     !        +1b8i_A    
                                               !            !     +--------8 
  --------------------------IT--QCNAMC--   L   !            !              +2r5y_A    
                                             -27            !  
  --RT----------------------NT----NAIARG   L   !            !                 +4cyc_B    
                                               !            !               +-5 
  RT------------------------NT----NAIARG   L   !            !             +-9 +1puf_B    
                                               !            !             ! ! 
  --HTRT--------------------NC--STNARG--   L   !   +-------25  +---------15 +1k61_B    
                                               !   !        !  !          !  
  --------------------------NC--ITNA----   L   !   !        !  !          +-6fqq_E    
                                               !   !        !  !  
  ------------------------KGSA--QA------   L   !   !        !  !                  +6j5b_C    
                                               !   !        !  !                +-1 
  --------------------------VA--QTNA----   L   !   !        !  !              +-4 +1fjl_B    
                                               !   !        !  !              ! ! 
  --------------------------IA--QCNAYA--   L   !   !        !  !        +----10 +1nk3_P    
                                               !   !        +-23        !     !  
  --------------------------IT--QTNAMG--   L   !   !           !        !     ! +5zjt_E    
                                               !   !           !        !     +-6 
  --RT--------------------IC--QTNA------   L   +--26           !        !       +5edn_J    
                                                   !           !     +-18  
  ------------------------RTVA--IANAMCRG   L       !           !     !  !        +1le8_A    
                                                   !           !     !  !      +-2 
  --------------------------VA--SGNA----   L       !           !     !  !    +-3 +3cmy_A    
                                                   !           +----19  !    ! ! 
  --------------------------VA--QTNA----   L       !                 !  +---12 +5hod_A    
                                                   !                 !       !  
  --------------------------IT--QCNAACRG   L       !                 !       +6a8r_A    
                                                   !                 !  
  ----RT--------------------NC--STNARG--   L       !                 +------1mnm_C    
                                                   !  
  ------------------------RTVA--ITNAMCRG   L       +-----------------------1yrn_A    
                                             

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updated Thu Sep 12 19:11:43 2024