| structure name | CRYSTAL STRUCTURE OF KAISO ZINC FINGER DNA BINDING DOMAIN IN COMPLEX WITH KAISO BINDING SITE DNA (Transcriptional regulator Kaiso) |
| reference | Martinez-Yamout et al. Proc.Natl.Acad.Sci.USA 109 15229 2012 |
| source | Homo sapiens |
| experiment | X-ray (resolution=2.40, R-factor=0.223) |
| structural superfamily | beta-beta-alpha zinc fingers; |
| sequence family | Zinc finger, C2H2 type; |
| redundant complexes | 4f6n 2lt7 |
| reference complex | 2lt7_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | TSRLEYNYQR |
Estimated binding specificities ?
| readout + contact |  |
A | 0 0 0 0 96 0 0 38 C | 20 0 0 96 0 0 0 19 G | 0 96 96 0 0 96 96 19 T | 76 0 0 0 0 0 0 20scan! |
Dendrogram of similar interfaces ?
matrix format------TTSGRG--LT--ETYC----NTYGQG----RG L +--------4f6m_A +---5 ITST--STHTRG--RG----EA--RA--TTTGECRG-- L ! +--------5v3j_F ! --QA--TTNA--STQAQTATSTNTATTTLAHGTCRG-- L +--6 +1g2f_F ! ! +-1 --KT--STHT----RG--DAQA--RGRGSTDCHGTT-- L ! ! +--3 +6b0o_A ! ! ! ! ------KGDCRG--QARGATNA----QA--ATHG---- L +-7 +--------4 +2i13_A ! ! ! --EC--SCKGRG----TCYCKA--RGQA----TC---- L ! ! +---5yeg_A ! ! --RGSTDAHARG--RGSTDCHG--TTRG--DAEGRG-- L --8 ! +5kl3_A ! +---------------2 --KG--WTKA--------HCHG--RGTA--ACNAKG-- L ! +1tf6_A ! --------------RG--DGEC--RGRGSGDCHA---- L +-----------------2wbs_A |
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updated Mon Dec 16 23:16:02 2024