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structure nameCRYSTAL STRUCTURE OF KAISO ZINC FINGER DNA BINDING PROTEIN IN COMPLEX WITH METHYLATED CPG SITE DNA
(Transcriptional regulator Kaiso)
referenceMartinez-Yamout et al. Proc.Natl.Acad.Sci.USA 109 15229 2012
sourceHomo sapiens
experimentX-ray (resolution=2.80, R-factor=0.230)
structural superfamilybeta-beta-alpha zinc fingers;
sequence familyZinc finger, C2H2 type;
reference complex2lt7_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSREYYQRY

Estimated binding specificities ?

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# IC=1.247 IC/col=0.139 n_of_columns=9 specificity:   
A |  19  63  24  24  24  24   7  24  13
C |  19  13  24  24  24  24   7  24  14
G |  39  10  24  24  24  24  74  24  56
T |  19  10  24  24  24  24   8  24  13
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updated Thu Sep 12 19:13:30 2024