4ff1_A : 3D-footprint complex

structure name	N4 MINI-VRNAP TRANSCRIPTION INITIATION COMPLEX, 1 MIN AFTER SOAKING GTP, ATP AND MN (Virion RNA polymerase)
reference	Murakami et al. J.Biol.Chem. 288 3305 2013
source	Enterobacteria phage N4
experiment	X-ray (resolution=2.47, R-factor=0.156)
reference complex	3q23_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4ff1_A interface=109,111,114,124,166,168,169,172,176,181,197,199,200,203,262,263,264,313,419,670,673,675,683,812,816,896,899,912,920, eelkegidavypslvgtadskaegiknyfklsftlpeeqksrtvgseaplkdvaqalssraryelfteketanpafngevikrykelmehgegiadilrsrlakflntKdVgkRfaqgteanrWvggkllniveqdgdtfkyneqllqtavlaglqwrltatsntAiKDakDvaaItgidQallpeglveqfdtgmTlTEavSslaqkiesywglsrnpnaplgytkgiptamaaeilaafvestdvvenivdmseidpdnKKTiglytiteldsfdpinsfptaieeavlvnptekmffgddippvantqlRnpavrntpeqkaalkaeqatefyvhtpmvqfyetlgkdrilelmgagtlnkellndnhakslegknrsvedsynqlfsvieqvraqsedistvpihyaynmtrvgRmqmlgkynpqsaklvreailptkatldlsnqnnedfsafqlglaqaldikvhtmtrevmsdeltkllegnlkpaidmmvefnttgslpenavdvlntalgdrksfvalmalmeysrylvaedksafvtplyveadgvtngpinammlmtgglftpdwirniakgglfigspnktmnehrstadnndlyqastnalmeslgklrsnyasnmpiqsqidsllslmdlflpdinlgengalelkrgiaknpltItiYgSgargiagKlvssvtdaiyermsdvlkarakdpnisaamamfgkqaaseahaeellarflkdmetltstvpvkrkgvlelqstgtgakgkinpktytikgeqlkalqenmlhffveplrngitqtvgeslvysteqlQkatQiqsvvledmfkqrvqeklaekakdptwkkgdfltqkelndiqaslnnlapmietgsqtfyiagsenaevanqvlatnldDrmRvpmsiyapaqagVagipfmtIgtgdgmmmqtlstmkgapkntlkifdgmniglnditdasrkaneavytswqgnpiknvyesyakfmknvdfsklspealeaigksaleydqrenatvddianaasliernlrnialgvdirhkvldkvnlsidqmaavgapyqnngkidlsnmtpeqqadelnklfreelearkq
interface signature	KVRWAKDDIQTTESKKTRRIYSKQQDRVI

Estimated binding specificities ?

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# IC=17.332 IC/col=0.867 n_of_columns=20

specificity:

A |   0   0  24  67  96  96  96   0  69  96   0   0   0   0  24   9  24  24  24   0
C |   0   0  24  11   0   0   0   0   9   0   0  96   0   0  24   9  24  24  24  96
G |   0   0  24   9   0   0   0  96   9   0  96   0  96  96  24  67  24  24  24   0
T |  96  96  24   9   0   0   0   0   9   0   0   0   0   0  24  11  24  24  24   0

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updated Thu Sep 12 19:13:46 2024