4ff3_B : 3D-footprint complex

structure name	N4 MINI-VRNAP TRANSCRIPTION INITIATION COMPLEX, 3 MIN AFTER SOAKING GTP, ATP AND MN (Virion RNA polymerase)
reference	Murakami et al. J.Biol.Chem. 288 3305 2013
source	Enterobacteria phage N4
experiment	X-ray (resolution=2.00, R-factor=0.182)
reference complex	3q23_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4ff3_B interface=109,111,114,124,166,168,169,172,176,181,197,199,200,203,262,263,264,313,670,673,675,683,812,896,899,912,920, eelkegidavypslvgtadskaegiknyfklsftlpeeqksrtvgseaplkdvaqalssraryelfteketanpafngevikrykelmehgegiadilrsrlakflntKdVgkRfaqgteanrWvggkllniveqdgdtfkyneqllqtavlaglqwrltatsntAiKDakDvaaItgidQallpeglveqfdtgmTlTEavSslaqkiesywglsrnpnaplgytkgiptamaaeilaafvestdvvenivdmseidpdnKKTiglytiteldsfdpinsfptaieeavlvnptekmffgddippvantqlRnpavrntpeqkaalkaeqatefyvhtpmvqfyetlgkdrilelmgagtlnkellndnhakslegknrsvedsynqlfsvieqvraqsedistvpihyaynmtrvgrmqmlgkynpqsaklvreailptkatldlsnqnnedfsafqlglaqaldikvhtmtrevmsdeltkllegnlkpaidmmvefnttgslpenavdvlntalgdrksfvalmalmeysrylvaedksafvtplyveadgvtngpinammlmtgglftpdwirniakgglfigspnktmnehrstadnndlyqastnalmeslgklrsnyasnmpiqsqidsllslmdlflpdinlgengalelkrgiaknpltItiYgSgargiagKlvssvtdaiyermsdvlkarakdpnisaamamfgkqaaseahaeellarflkdmetltstvpvkrkgvlelqstgtgakgkinpktytikgeqlkalqenmlhffveplrngitqtvgeslvysteqlQkatqiqsvvledmfkqrvqeklaekakdptwkkgdfltqkelndiqaslnnlapmietgsqtfyiagsenaevanqvlatnldDrmRvpmsiyapaqagVagipfmtIgtgdgmmmqtlstmkgapkntlkifdgmniglnditdasrkaneavytswqgnpiknvyesyakfmknvdfsklspealeaigksaleydqrenatvddianaasliernlrnialgvdirhkvldkvnlsidqmaavgapyqnngkidlsnmtpeqqadelnklfreelearkq
interface signature	KVRWAKDDIQTTESKKTRIYSKQDRVI

Estimated binding specificities ?

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# IC=16.121 IC/col=0.806 n_of_columns=20

specificity:

A |   2   0  21  60  96  96  96   0  31  96   0   0   0   0  24  19  21  24  24   0
C |   2   0  31  12   0   0   0   0  23   0   0  96   0   0  24  19  33  24  24  96
G |   2   0  23  12   0   0   0  96  21   0  96   0  96  96  24  38  21  24  24   0
T |  90  96  21  12   0   0   0   0  21   0   0   0   0   0  24  20  21  24  24   0

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updated Thu Sep 12 19:14:22 2024