4ff4_A : 3D-footprint complex

structure name	N4 MINI-VRNAP TRANSCRIPTION INITIATION COMPLEX, 4 MIN AFTER SOAKING GTP, ATP AND MN (Virion RNA polymerase)
reference	J.Biol.Chem. 288 3305 2013 X-RAY DIFFRACTION
source	Enterobacteria phage N4
experiment	X-ray (resolution=2.03, R-factor=0.192)
reference complex	3q23_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4ff4_A interface=109,111,114,124,166,168,169,172,176,181,197,199,200,203,262,263,264,313,670,673,675,683,812,816,896,899,912,920, eelkegidavypslvgtadskaegiknyfklsftlpeeqksrtvgseaplkdvaqalssraryelfteketanpafngevikrykelmehgegiadilrsrlakflntKdVgkRfaqgteanrWvggkllniveqdgdtfkyneqllqtavlaglqwrltatsntAiKDakDvaaItgidQallpeglveqfdtgmTlTEavSslaqkiesywglsrnpnaplgytkgiptamaaeilaafvestdvvenivdmseidpdnKKTiglytiteldsfdpinsfptaieeavlvnptekmffgddippvantqlRnpavrntpeqkaalkaeqatefyvhtpmvqfyetlgkdrilelmgagtlnkellndnhakslegknrsvedsynqlfsvieqvraqsedistvpihyaynmtrvgrmqmlgkynpqsaklvreailptkatldlsnqnnedfsafqlglaqaldikvhtmtrevmsdeltkllegnlkpaidmmvefnttgslpenavdvlntalgdrksfvalmalmeysrylvaedksafvtplyveadgvtngpinammlmtgglftpdwirniakgglfigspnktmnehrstadnndlyqastnalmeslgklrsnyasnmpiqsqidsllslmdlflpdinlgengalelkrgiaknpltItiYgSgargiagKlvssvtdaiyermsdvlkarakdpnisaamamfgkqaaseahaeellarflkdmetltstvpvkrkgvlelqstgtgakgkinpktytikgeqlkalqenmlhffveplrngitqtvgeslvysteqlQkatQiqsvvledmfkqrvqeklaekakdptwkkgdfltqkelndiqaslnnlapmietgsqtfyiagsenaevanqvlatnldDrmRvpmsiyapaqagVagipfmtIgtgdgmmmqtlstmkgapkntlkifdgmniglnditdasrkaneavytswqgnpiknvyesyakfmknvdfsklspealeaigksaleydqrenatvddianaasliernlrnialgvdirhkvldkvnlsidqmaavgapyqnngkidlsnmtpeqqadelnklfreelearkq
interface signature	KVRWAKDDIQTTESKKTRIYSKQQDRVI

Estimated binding specificities ?

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# IC=15.867 IC/col=0.793 n_of_columns=20

specificity:

A |   0   0  21  31  96  96  96   0  31  96   0   0   0   0  24  16  24  24  24   2
C |   0   0  31  21   0   0   0   0  23   0   0  96   0   0  24  16  24  24  24  90
G |   0   0  21  23   0   0   0  96  21   0  96   0  96  96  24  45  24  24  24   2
T |  96  96  23  21   0   0   0   0  21   0   0   0   0   0  24  19  24  24  24   2

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updated Sat Aug 2 06:17:58 2025