4fgn_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE SV40 LARGE T-ANTIGEN ORIGIN BINING DOMAIN BOUND TO SITE I DNA
reference	Bullock et al. J.Virol. 87 2923 2013
source	Simian virus 40
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	2itl_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4fgn_A interface=20,21,22,23,70,72, edpkdfpsellsflshavfSNRTlacfaiyttkekaallykkimekysvtfisrhnsynhnilffltphRhRvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpgglkehdfn > 4fgn_B interface=19,20,21,22,71, dpkdfpsellsflshavfSNRTlacfaiyttkekaallykkimekysvtfisrhnsynhnilffltphrhRvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpgglkehdf
interface signature	SNRTRR/SNRTR

Estimated binding specificities ?

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# IC=14.853 IC/col=0.782 n_of_columns=19

specificity:

A |   1   0   0   0   4   0   4  24  24  24  24  24  81   0   0   4   4   4   9
C |   4   0  96  91   7  96  86  24  24  24  24  24   7   0  96  91   9  92  72
G |  91  96   0   4   4   0   4  24  24  24  24  24   4  96   0   1   7   0   4
T |   0   0   0   1  81   0   2  24  24  24  24  24   4   0   0   0  76   0  11

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updated Mon Sep 9 21:52:24 2024