4fgn_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE SV40 LARGE T-ANTIGEN ORIGIN BINING DOMAIN BOUND TO SITE I DNA
reference	Bullock et al. J.Virol. 87 2923 2013
source	Simian virus 40
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	2itl_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 4fgn_A interface=20,21,22,23,70,72, edpkdfpsellsflshavfSNRTlacfaiyttkekaallykkimekysvtfisrhnsynhnilffltphRhRvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpgglkehdfn > 4fgn_B interface=19,20,21,22,71, dpkdfpsellsflshavfSNRTlacfaiyttkekaallykkimekysvtfisrhnsynhnilffltphrhRvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpgglkehdf
interface signature	SNRTRR/SNRTR

Estimated binding specificities ?

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# IC=15.146 IC/col=0.797 n_of_columns=19

specificity:

A |   0   0   0   0   4   0   6  24  24  24  24  24  84   0   0   4   0   4   9
C |   4   0  96  91   9  96  82  24  24  24  24  24   4   0  96  92   4  92  73
G |  92  96   0   5   9   0   4  24  24  24  24  24   4  96   0   0   4   0  10
T |   0   0   0   0  74   0   4  24  24  24  24  24   4   0   0   0  88   0   4

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updated Wed Jul 30 01:00:09 2025